Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 101

1.

Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon.

Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ.

Genome Biol. 2013 Dec 24;14(12):R145. doi: 10.1186/gb-2013-14-12-r145.

PMID:
24367943
[PubMed - in process]
Free PMC Article
2.

Comprehensive investigation of microRNAs enhanced by analysis of sequence variants, expression patterns, ARGONAUTE loading, and target cleavage.

Jeong DH, Thatcher SR, Brown RS, Zhai J, Park S, Rymarquis LA, Meyers BC, Green PJ.

Plant Physiol. 2013 Jul;162(3):1225-45. doi: 10.1104/pp.113.219873. Epub 2013 May 24.

PMID:
23709668
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Conserved microRNAs and their targets in model grass species Brachypodium distachyon.

Unver T, Budak H.

Planta. 2009 Sep;230(4):659-69. doi: 10.1007/s00425-009-0974-7. Epub 2009 Jul 8.

PMID:
19585143
[PubMed - indexed for MEDLINE]
4.

Novel microRNAs uncovered by deep sequencing of small RNA transcriptomes in bread wheat (Triticum aestivum L.) and Brachypodium distachyon (L.) Beauv.

Wei B, Cai T, Zhang R, Li A, Huo N, Li S, Gu YQ, Vogel J, Jia J, Qi Y, Mao L.

Funct Integr Genomics. 2009 Nov;9(4):499-511. doi: 10.1007/s10142-009-0128-9. Epub 2009 Jun 5.

PMID:
19499258
[PubMed - indexed for MEDLINE]
5.

Identification and profiling of novel microRNAs in the Brassica rapa genome based on small RNA deep sequencing.

Kim B, Yu HJ, Park SG, Shin JY, Oh M, Kim N, Mun JH.

BMC Plant Biol. 2012 Nov 19;12:218. doi: 10.1186/1471-2229-12-218.

PMID:
23163954
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response.

Zhang J, Xu Y, Huan Q, Chong K.

BMC Genomics. 2009 Sep 23;10:449. doi: 10.1186/1471-2164-10-449.

PMID:
19772667
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Differential expression of miRNAs and their target genes in senescing leaves and siliques: insights from deep sequencing of small RNAs and cleaved target RNAs.

Thatcher SR, Burd S, Wright C, Lers A, Green PJ.

Plant Cell Environ. 2014 Jun 26. doi: 10.1111/pce.12393. [Epub ahead of print]

PMID:
24965556
[PubMed - as supplied by publisher]
8.

Exploring the interaction between small RNAs and R genes during Brachypodium response to Fusarium culmorum infection.

Lucas SJ, Baştaş K, Budak H.

Gene. 2014 Feb 25;536(2):254-64. doi: 10.1016/j.gene.2013.12.025. Epub 2013 Dec 22.

PMID:
24368332
[PubMed - indexed for MEDLINE]
9.

Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing.

Shamimuzzaman M, Vodkin L.

BMC Genomics. 2012 Jul 16;13:310. doi: 10.1186/1471-2164-13-310.

PMID:
22799740
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Dehydration stress-responsive miRNA in Brachypodium distachyon: evident by genome-wide screening of microRNAs expression.

Budak H, Akpinar A.

OMICS. 2011 Nov;15(11):791-9. doi: 10.1089/omi.2011.0073.

PMID:
22122669
[PubMed - indexed for MEDLINE]
11.

Identification and characteristics of microRNAs from Bombyx mori.

He PA, Nie Z, Chen J, Chen J, Lv Z, Sheng Q, Zhou S, Gao X, Kong L, Wu X, Jin Y, Zhang Y.

BMC Genomics. 2008 May 28;9:248. doi: 10.1186/1471-2164-9-248.

PMID:
18507836
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Unique and conserved microRNAs in wheat chromosome 5D revealed by next-generation sequencing.

Kurtoglu KY, Kantar M, Lucas SJ, Budak H.

PLoS One. 2013 Jul 23;8(7):e69801. doi: 10.1371/journal.pone.0069801. Print 2013.

PMID:
23936103
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Prediction of novel miRNAs and associated target genes in Glycine max.

Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S14. doi: 10.1186/1471-2105-11-S1-S14.

PMID:
20122185
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets.

Addo-Quaye C, Miller W, Axtell MJ.

Bioinformatics. 2009 Jan 1;25(1):130-1. doi: 10.1093/bioinformatics/btn604. Epub 2008 Nov 18.

PMID:
19017659
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.

Jeong DH, Park S, Zhai J, Gurazada SG, De Paoli E, Meyers BC, Green PJ.

Plant Cell. 2011 Dec;23(12):4185-207. doi: 10.1105/tpc.111.089045. Epub 2011 Dec 9.

PMID:
22158467
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Rapid construction of parallel analysis of RNA end (PARE) libraries for Illumina sequencing.

Zhai J, Arikit S, Simon SA, Kingham BF, Meyers BC.

Methods. 2014 May 1;67(1):84-90. doi: 10.1016/j.ymeth.2013.06.025. Epub 2013 Jun 28.

PMID:
23810899
[PubMed - in process]
17.

Global identification of microRNA-target RNA pairs by parallel analysis of RNA ends.

German MA, Pillay M, Jeong DH, Hetawal A, Luo S, Janardhanan P, Kannan V, Rymarquis LA, Nobuta K, German R, De Paoli E, Lu C, Schroth G, Meyers BC, Green PJ.

Nat Biotechnol. 2008 Aug;26(8):941-6. doi: 10.1038/nbt1417. Epub 2008 Jun 9.

PMID:
18542052
[PubMed - indexed for MEDLINE]
18.

Cloning and characterization of microRNAs from rice.

Sunkar R, Girke T, Jain PK, Zhu JK.

Plant Cell. 2005 May;17(5):1397-411. Epub 2005 Apr 1.

PMID:
15805478
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Divergent patterns of endogenous small RNA populations from seed and vegetative tissues of Glycine max.

Zabala G, Campos E, Varala KK, Bloomfield S, Jones SI, Win H, Tuteja JH, Calla B, Clough SJ, Hudson M, Vodkin LO.

BMC Plant Biol. 2012 Oct 2;12:177. doi: 10.1186/1471-2229-12-177.

PMID:
23031057
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Small RNA and degradome sequencing reveal complex miRNA regulation during cotton somatic embryogenesis.

Yang X, Wang L, Yuan D, Lindsey K, Zhang X.

J Exp Bot. 2013 Apr;64(6):1521-36. doi: 10.1093/jxb/ert013. Epub 2013 Feb 4.

PMID:
23382553
[PubMed - indexed for MEDLINE]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk