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Results: 1 to 20 of 98

1.

The evolution, impact and properties of exonic splice enhancers.

Cáceres EF, Hurst LD.

Genome Biol. 2013 Dec 20;14(12):R143. doi: 10.1186/gb-2013-14-12-r143.

PMID:
24359918
[PubMed - in process]
Free PMC Article
2.

Evidence for deep phylogenetic conservation of exonic splice-related constraints: splice-related skews at exonic ends in the brown alga Ectocarpus are common and resemble those seen in humans.

Wu X, Tronholm A, Cáceres EF, Tovar-Corona JM, Chen L, Urrutia AO, Hurst LD.

Genome Biol Evol. 2013;5(9):1731-45. doi: 10.1093/gbe/evt115.

PMID:
23902749
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Effect of exonic splicing regulation on synonymous codon usage in alternatively spliced exons of Dscam.

Takahashi A.

BMC Evol Biol. 2009 Aug 27;9:214. doi: 10.1186/1471-2148-9-214.

PMID:
19709440
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Compensatory relationship between splice sites and exonic splicing signals depending on the length of vertebrate introns.

Dewey CN, Rogozin IB, Koonin EV.

BMC Genomics. 2006 Dec 8;7:311.

PMID:
17156453
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A computational survey of candidate exonic splicing enhancer motifs in the model plant Arabidopsis thaliana.

Pertea M, Mount SM, Salzberg SL.

BMC Bioinformatics. 2007 May 21;8:159.

PMID:
17517127
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Exonic splicing regulatory elements skew synonymous codon usage near intron-exon boundaries in mammals.

Parmley JL, Hurst LD.

Mol Biol Evol. 2007 Aug;24(8):1600-3. Epub 2007 May 24.

PMID:
17525472
[PubMed - indexed for MEDLINE]
Free Article
7.
8.

Genomic features defining exonic variants that modulate splicing.

Woolfe A, Mullikin JC, Elnitski L.

Genome Biol. 2010;11(2):R20. doi: 10.1186/gb-2010-11-2-r20. Epub 2010 Feb 16.

PMID:
20158892
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Predictive identification of exonic splicing enhancers in human genes.

Fairbrother WG, Yeh RF, Sharp PA, Burge CB.

Science. 2002 Aug 9;297(5583):1007-13. Epub 2002 Jul 11.

PMID:
12114529
[PubMed - indexed for MEDLINE]
Free Article
10.

Synonymous SNPs provide evidence for selective constraint on human exonic splicing enhancers.

Carlini DB, Genut JE.

J Mol Evol. 2006 Jan;62(1):89-98. Epub 2005 Nov 30.

PMID:
16320116
[PubMed - indexed for MEDLINE]
11.

Single nucleotide polymorphism-based validation of exonic splicing enhancers.

Fairbrother WG, Holste D, Burge CB, Sharp PA.

PLoS Biol. 2004 Sep;2(9):E268. Epub 2004 Aug 31.

PMID:
15340491
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

A 32-nucleotide exon-splicing enhancer regulates usage of competing 5' splice sites in a differential internal exon.

Humphrey MB, Bryan J, Cooper TA, Berget SM.

Mol Cell Biol. 1995 Aug;15(8):3979-88.

PMID:
7623794
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Missense mutations in cancer suppressor gene TP53 are colocalized with exonic splicing enhancers (ESEs).

Gorlov IP, Gorlova OY, Frazier ML, Amos CI.

Mutat Res. 2004 Oct 4;554(1-2):175-83.

PMID:
15450416
[PubMed - indexed for MEDLINE]
14.

Evidence for a trade-off between translational efficiency and splicing regulation in determining synonymous codon usage in Drosophila melanogaster.

Warnecke T, Hurst LD.

Mol Biol Evol. 2007 Dec;24(12):2755-62. Epub 2007 Sep 28.

PMID:
17905999
[PubMed - indexed for MEDLINE]
Free Article
15.

SNPSplicer: systematic analysis of SNP-dependent splicing in genotyped cDNAs.

ElSharawy A, Manaster C, Teuber M, Rosenstiel P, Kwiatkowski R, Huse K, Platzer M, Becker A, Nürnberg P, Schreiber S, Hampe J.

Hum Mutat. 2006 Nov;27(11):1129-34.

PMID:
16937379
[PubMed - indexed for MEDLINE]
16.

A short sequence within two purine-rich enhancers determines 5' splice site specificity.

Elrick LL, Humphrey MB, Cooper TA, Berget SM.

Mol Cell Biol. 1998 Jan;18(1):343-52.

PMID:
9418881
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Splicing and the evolution of proteins in mammals.

Parmley JL, Urrutia AO, Potrzebowski L, Kaessmann H, Hurst LD.

PLoS Biol. 2007 Feb;5(2):e14.

PMID:
17298171
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Evidence for purifying selection against synonymous mutations in mammalian exonic splicing enhancers.

Parmley JL, Chamary JV, Hurst LD.

Mol Biol Evol. 2006 Feb;23(2):301-9. Epub 2005 Oct 12.

PMID:
16221894
[PubMed - indexed for MEDLINE]
Free Article
19.

Interplay between exonic splicing enhancers, mRNA processing, and mRNA surveillance in the dystrophic Mdx mouse.

Buvoli M, Buvoli A, Leinwand LA.

PLoS One. 2007 May 9;2(5):e427.

PMID:
17487273
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Computational analysis of splicing errors and mutations in human transcripts.

Kurmangaliyev YZ, Gelfand MS.

BMC Genomics. 2008 Jan 14;9:13. doi: 10.1186/1471-2164-9-13.

PMID:
18194514
[PubMed - indexed for MEDLINE]
Free PMC Article

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