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Results: 1 to 20 of 100

1.

Transcriptome and proteome quantification of a tumor model provides novel insights into post-transcriptional gene regulation.

Jüschke C, Dohnal I, Pichler P, Harzer H, Swart R, Ammerer G, Mechtler K, Knoblich JA.

Genome Biol. 2013 Nov 30;14(11):r133. doi: 10.1186/gb-2013-14-11-r133.

PMID:
24289286
[PubMed - in process]
Free PMC Article
2.

Editorial: protein systems biology: method, regulation, and network.

Chen Q, Chen M.

Curr Protein Pept Sci. 2014;15(6):519-21.

PMID:
25135673
[PubMed - in process]
3.

Complementary iTRAQ proteomics and RNA-seq transcriptomics reveal multiple levels of regulation in response to nitrogen starvation in Synechocystis sp. PCC 6803.

Huang S, Chen L, Te R, Qiao J, Wang J, Zhang W.

Mol Biosyst. 2013 Oct;9(10):2565-74. doi: 10.1039/c3mb70188c.

PMID:
23942477
[PubMed - indexed for MEDLINE]
4.

Transcriptional and Post Transcriptional Control of Enterococcal Gene Regulation.

DebRoy S, Gao P, Garsin DA, Harvey BR, Kos V, Nes IF, Solheim M.

In: Gilmore MS, Clewell DB, Ike Y, Shankar N, editors. Enterococci: From Commensals to Leading Causes of Drug Resistant Infection [Internet]. Boston: Massachusetts Eye and Ear Infirmary; 2014-.
2014 Feb 12.

PMID:
24649509
[PubMed]
Books & Documents
5.

Integrative proteomic and transcriptomic analyses reveal multiple post-transcriptional regulatory mechanisms of mouse spermatogenesis.

Gan H, Cai T, Lin X, Wu Y, Wang X, Yang F, Han C.

Mol Cell Proteomics. 2013 May;12(5):1144-57. doi: 10.1074/mcp.M112.020123. Epub 2013 Jan 16.

PMID:
23325766
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Integrated proteomic and transcriptomic analysis reveals novel genes and regulatory mechanisms involved in salt stress responses in Synechocystis sp. PCC 6803.

Qiao J, Huang S, Te R, Wang J, Chen L, Zhang W.

Appl Microbiol Biotechnol. 2013 Sep;97(18):8253-64. doi: 10.1007/s00253-013-5139-8. Epub 2013 Aug 8.

PMID:
23925534
[PubMed - indexed for MEDLINE]
7.

Systems-level evidence of transcriptional co-regulation of yeast protein complexes.

Lee JW, Zemojtel T, Shakhnovich E.

J Comput Biol. 2009 Feb;16(2):331-9. doi: 10.1089/cmb.2008.17TT.

PMID:
19193150
[PubMed - indexed for MEDLINE]
8.

Comprehensive analysis of RNA-seq data reveals the complexity of the transcriptome in Brassica rapa.

Tong C, Wang X, Yu J, Wu J, Li W, Huang J, Dong C, Hua W, Liu S.

BMC Genomics. 2013 Oct 7;14:689. doi: 10.1186/1471-2164-14-689.

PMID:
24098974
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Comprehensive structural annotation of Pichia pastoris transcriptome and the response to various carbon sources using deep paired-end RNA sequencing.

Liang S, Wang B, Pan L, Ye Y, He M, Han S, Zheng S, Wang X, Lin Y.

BMC Genomics. 2012 Dec 31;13:738. doi: 10.1186/1471-2164-13-738.

PMID:
23276294
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

High-throughput sequencing and analysis of the gill tissue transcriptome from the deep-sea hydrothermal vent mussel Bathymodiolus azoricus.

Bettencourt R, Pinheiro M, Egas C, Gomes P, Afonso M, Shank T, Santos RS.

BMC Genomics. 2010 Oct 11;11:559. doi: 10.1186/1471-2164-11-559.

PMID:
20937131
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The transcriptional regulation of protein complexes; a cross-species perspective.

Webb EC, Westhead DR.

Genomics. 2009 Dec;94(6):369-76. doi: 10.1016/j.ygeno.2009.08.003. Epub 2009 Aug 18.

PMID:
19698777
[PubMed - indexed for MEDLINE]
Free Article
12.

Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes.

de Groot MJ, Daran-Lapujade P, van Breukelen B, Knijnenburg TA, de Hulster EA, Reinders MJ, Pronk JT, Heck AJ, Slijper M.

Microbiology. 2007 Nov;153(Pt 11):3864-78.

PMID:
17975095
[PubMed - indexed for MEDLINE]
Free Article
13.

Transcriptomic and iTRAQ proteomic approaches reveal novel short-term hyperosmotic stress responsive proteins in the gill of the Japanese eel (Anguilla japonica).

Tse WK, Sun J, Zhang H, Law AY, Yeung BH, Chow SC, Qiu JW, Wong CK.

J Proteomics. 2013 Aug 26;89:81-94. doi: 10.1016/j.jprot.2013.05.026. Epub 2013 Jun 2.

PMID:
23735544
[PubMed - indexed for MEDLINE]
14.

Quantitative evaluation of the mitochondrial proteomes of Drosophila melanogaster adapted to extreme oxygen conditions.

Yin S, Xue J, Sun H, Wen B, Wang Q, Perkins G, Zhao HW, Ellisman MH, Hsiao YH, Yin L, Xie Y, Hou G, Zi J, Lin L, Haddad GG, Zhou D, Liu S.

PLoS One. 2013 Sep 12;8(9):e74011. doi: 10.1371/journal.pone.0074011. eCollection 2013.

PMID:
24069262
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Strand-specific RNA-Seq reveals widespread and developmentally regulated transcription of natural antisense transcripts in Plasmodium falciparum.

Siegel TN, Hon CC, Zhang Q, Lopez-Rubio JJ, Scheidig-Benatar C, Martins RM, Sismeiro O, Coppée JY, Scherf A.

BMC Genomics. 2014 Feb 22;15:150. doi: 10.1186/1471-2164-15-150.

PMID:
24559473
[PubMed - in process]
Free PMC Article
16.

An integrative analysis of the transcriptome and proteome of the pulp of a spontaneous late-ripening sweet orange mutant and its wild type improves our understanding of fruit ripening in citrus.

Wu J, Xu Z, Zhang Y, Chai L, Yi H, Deng X.

J Exp Bot. 2014 Apr;65(6):1651-71. doi: 10.1093/jxb/eru044. Epub 2014 Mar 5.

PMID:
24600016
[PubMed - in process]
Free PMC Article
17.

Comprehensive analysis of the Corynebacterium glutamicum transcriptome using an improved RNAseq technique.

Pfeifer-Sancar K, Mentz A, Rückert C, Kalinowski J.

BMC Genomics. 2013 Dec 17;14:888. doi: 10.1186/1471-2164-14-888.

PMID:
24341750
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Variation and genetic control of protein abundance in humans.

Wu L, Candille SI, Choi Y, Xie D, Jiang L, Li-Pook-Than J, Tang H, Snyder M.

Nature. 2013 Jul 4;499(7456):79-82. doi: 10.1038/nature12223. Epub 2013 May 15.

PMID:
23676674
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Comparison of transcriptome technologies in the pathogenic fungus Aspergillus fumigatus reveals novel insights into the genome and MpkA dependent gene expression.

Müller S, Baldin C, Groth M, Guthke R, Kniemeyer O, Brakhage AA, Valiante V.

BMC Genomics. 2012 Oct 2;13:519. doi: 10.1186/1471-2164-13-519.

PMID:
23031507
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Regulation of transcriptome, translation, and proteome in response to environmental stress in fission yeast.

Lackner DH, Schmidt MW, Wu S, Wolf DA, Bähler J.

Genome Biol. 2012 Apr 18;13(4):R25. doi: 10.1186/gb-2012-13-4-r25.

PMID:
22512868
[PubMed - indexed for MEDLINE]
Free PMC Article

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