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Results: 1 to 20 of 104

1.

Chromatin signatures at transcriptional start sites separate two equally populated yet distinct classes of intergenic long noncoding RNAs.

Marques AC, Hughes J, Graham B, Kowalczyk MS, Higgs DR, Ponting CP.

Genome Biol. 2013 Nov 29;14(11):R131. doi: 10.1186/gb-2013-14-11-r131.

PMID:
24289259
[PubMed - in process]
Free PMC Article
2.

Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer.

Tahira AC, Kubrusly MS, Faria MF, Dazzani B, Fonseca RS, Maracaja-Coutinho V, Verjovski-Almeida S, Machado MC, Reis EM.

Mol Cancer. 2011 Nov 13;10:141. doi: 10.1186/1476-4598-10-141.

PMID:
22078386
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Long noncoding RNA in genome regulation: prospects and mechanisms.

Hung T, Chang HY.

RNA Biol. 2010 Sep-Oct;7(5):582-5. Epub 2010 Sep 1.

PMID:
20930520
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis.

Pauli A, Valen E, Lin MF, Garber M, Vastenhouw NL, Levin JZ, Fan L, Sandelin A, Rinn JL, Regev A, Schier AF.

Genome Res. 2012 Mar;22(3):577-91. doi: 10.1101/gr.133009.111. Epub 2011 Nov 22.

PMID:
22110045
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Lineage and species-specific long noncoding RNAs during erythro-megakaryocytic development.

Paralkar VR, Mishra T, Luan J, Yao Y, Kossenkov AV, Anderson SM, Dunagin M, Pimkin M, Gore M, Sun D, Konuthula N, Raj A, An X, Mohandas N, Bodine DM, Hardison RC, Weiss MJ.

Blood. 2014 Mar 20;123(12):1927-37. doi: 10.1182/blood-2013-12-544494. Epub 2014 Feb 4.

PMID:
24497530
[PubMed - indexed for MEDLINE]
6.

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H, Guernec G, Martin D, Merkel A, Knowles DG, Lagarde J, Veeravalli L, Ruan X, Ruan Y, Lassmann T, Carninci P, Brown JB, Lipovich L, Gonzalez JM, Thomas M, Davis CA, Shiekhattar R, Gingeras TR, Hubbard TJ, Notredame C, Harrow J, Guigรณ R.

Genome Res. 2012 Sep;22(9):1775-89. doi: 10.1101/gr.132159.111.

PMID:
22955988
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Rapid turnover of long noncoding RNAs and the evolution of gene expression.

Kutter C, Watt S, Stefflova K, Wilson MD, Goncalves A, Ponting CP, Odom DT, Marques AC.

PLoS Genet. 2012;8(7):e1002841. doi: 10.1371/journal.pgen.1002841. Epub 2012 Jul 26.

PMID:
22844254
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Roles of long noncoding RNAs in brain development, functional diversification and neurodegenerative diseases.

Wu P, Zuo X, Deng H, Liu X, Liu L, Ji A.

Brain Res Bull. 2013 Aug;97:69-80. doi: 10.1016/j.brainresbull.2013.06.001. Epub 2013 Jun 10. Review.

PMID:
23756188
[PubMed - indexed for MEDLINE]
9.

Functional importance of cardiac enhancer-associated noncoding RNAs in heart development and disease.

Ounzain S, Pezzuto I, Micheletti R, Burdet F, Sheta R, Nemir M, Gonzales C, Sarre A, Alexanian M, Blow MJ, May D, Johnson R, Dauvillier J, Pennacchio LA, Pedrazzini T.

J Mol Cell Cardiol. 2014 Aug 19;76C:55-70. doi: 10.1016/j.yjmcc.2014.08.009. [Epub ahead of print]

PMID:
25149110
[PubMed - as supplied by publisher]
Free Article
10.

De novo DNA demethylation and noncoding transcription define active intergenic regulatory elements.

Schlesinger F, Smith AD, Gingeras TR, Hannon GJ, Hodges E.

Genome Res. 2013 Oct;23(10):1601-14. doi: 10.1101/gr.157271.113. Epub 2013 Jun 28.

PMID:
23811145
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Transcriptional regulatory functions of nuclear long noncoding RNAs.

Vance KW, Ponting CP.

Trends Genet. 2014 Aug;30(8):348-55. doi: 10.1016/j.tig.2014.06.001. Epub 2014 Jun 25.

PMID:
24974018
[PubMed - in process]
Free PMC Article
12.

Long noncoding RNAs: Novel insights into hepatocelluar carcinoma.

He Y, Meng XM, Huang C, Wu BM, Zhang L, Lv XW, Li J.

Cancer Lett. 2014 Mar 1;344(1):20-7. doi: 10.1016/j.canlet.2013.10.021. Epub 2013 Oct 30. Review.

PMID:
24183851
[PubMed - indexed for MEDLINE]
13.

Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation.

Alvarez-Dominguez JR, Hu W, Yuan B, Shi J, Park SS, Gromatzky AA, van Oudenaarden A, Lodish HF.

Blood. 2014 Jan 23;123(4):570-81. doi: 10.1182/blood-2013-10-530683. Epub 2013 Nov 7.

PMID:
24200680
[PubMed - indexed for MEDLINE]
14.

Role of genomic architecture in the expression dynamics of long noncoding RNAs during differentiation of human neuroblastoma cells.

Batagov AO, Yarmishyn AA, Jenjaroenpun P, Tan JZ, Nishida Y, Kurochkin IV.

BMC Syst Biol. 2013 Oct 16;7 Suppl 3:S11. doi: 10.1186/1752-0509-7-S3-S11.

PMID:
24555823
[PubMed - in process]
Free PMC Article
15.

Chromatin isolation by RNA purification (ChIRP).

Chu C, Quinn J, Chang HY.

J Vis Exp. 2012 Mar 25;(61). pii: 3912. doi: 10.3791/3912.

PMID:
22472705
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Intergenic lncRNAs and the evolution of gene expression.

Marques AC, Ponting CP.

Curr Opin Genet Dev. 2014 Aug;27:48-53. doi: 10.1016/j.gde.2014.03.009. Epub 2014 May 21.

PMID:
24852186
[PubMed - in process]
17.

Expression analysis and in silico characterization of intronic long noncoding RNAs in renal cell carcinoma: emerging functional associations.

Fachel AA, Tahira AC, Vilella-Arias SA, Maracaja-Coutinho V, Gimba ER, Vignal GM, Campos FS, Reis EM, Verjovski-Almeida S.

Mol Cancer. 2013 Nov 15;12(1):140. doi: 10.1186/1476-4598-12-140.

PMID:
24238219
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A conserved noncoding sequence can function as a spermatocyte-specific enhancer and a bidirectional promoter for a ubiquitously expressed gene and a testis-specific long noncoding RNA.

Kurihara M, Shiraishi A, Satake H, Kimura AP.

J Mol Biol. 2014 Aug 26;426(17):3069-93. doi: 10.1016/j.jmb.2014.06.018. Epub 2014 Jul 11.

PMID:
25020229
[PubMed - in process]
19.

Genome-wide identification of long noncoding natural antisense transcripts and their responses to light in Arabidopsis.

Wang H, Chung PJ, Liu J, Jang IC, Kean MJ, Xu J, Chua NH.

Genome Res. 2014 Mar;24(3):444-53. doi: 10.1101/gr.165555.113. Epub 2014 Jan 8.

PMID:
24402519
[PubMed - in process]
Free PMC Article
20.

A screen for nuclear transcripts identifies two linked noncoding RNAs associated with SC35 splicing domains.

Hutchinson JN, Ensminger AW, Clemson CM, Lynch CR, Lawrence JB, Chess A.

BMC Genomics. 2007 Feb 1;8:39.

PMID:
17270048
[PubMed - indexed for MEDLINE]
Free PMC Article

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