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Items: 1 to 20 of 111


wKinMut: an integrated tool for the analysis and interpretation of mutations in human protein kinases.

Izarzugaza JM, Vazquez M, del Pozo A, Valencia A.

BMC Bioinformatics. 2013 Nov 29;14:345. doi: 10.1186/1471-2105-14-345.


Extraction of human kinase mutations from literature, databases and genotyping studies.

Krallinger M, Izarzugaza JM, Rodriguez-Penagos C, Valencia A.

BMC Bioinformatics. 2009 Aug 27;10 Suppl 8:S1. doi: 10.1186/1471-2105-10-S8-S1.


Prioritization of pathogenic mutations in the protein kinase superfamily.

Izarzugaza JM, del Pozo A, Vazquez M, Valencia A.

BMC Genomics. 2012 Jun 18;13 Suppl 4:S3. doi: 10.1186/1471-2164-13-S4-S3.


Interpretation of the consequences of mutations in protein kinases: combined use of bioinformatics and text mining.

Izarzugaza JM, Krallinger M, Valencia A.

Front Physiol. 2012 Aug 22;3:323. doi: 10.3389/fphys.2012.00323. eCollection 2012.


wKinMut-2: Identification and Interpretation of Pathogenic Variants in Human Protein Kinases.

Vazquez M, Pons T, Brunak S, Valencia A, Izarzugaza JM.

Hum Mutat. 2015 Oct 7. doi: 10.1002/humu.22914. [Epub ahead of print]


An integrated approach to the interpretation of single amino acid polymorphisms within the framework of CATH and Gene3D.

Izarzugaza JM, Baresic A, McMillan LE, Yeats C, Clegg AB, Orengo CA, Martin AC, Valencia A.

BMC Bioinformatics. 2009 Aug 27;10 Suppl 8:S5. doi: 10.1186/1471-2105-10-S8-S5.


Improved mutation tagging with gene identifiers applied to membrane protein stability prediction.

Winnenburg R, Plake C, Schroeder M.

BMC Bioinformatics. 2009 Aug 27;10 Suppl 8:S3. doi: 10.1186/1471-2105-10-S8-S3.


Automatic extraction of gene ontology annotation and its correlation with clusters in protein networks.

Daraselia N, Yuryev A, Egorov S, Mazo I, Ispolatov I.

BMC Bioinformatics. 2007 Jul 10;8:243.


Evaluation of BioCreAtIvE assessment of task 2.

Blaschke C, Leon EA, Krallinger M, Valencia A.

BMC Bioinformatics. 2005;6 Suppl 1:S16. Epub 2005 May 24.


An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.

Camon EB, Barrell DG, Dimmer EC, Lee V, Magrane M, Maslen J, Binns D, Apweiler R.

BMC Bioinformatics. 2005;6 Suppl 1:S17. Epub 2005 May 24.


MoKCa database--mutations of kinases in cancer.

Richardson CJ, Gao Q, Mitsopoulous C, Zvelebil M, Pearl LH, Pearl FM.

Nucleic Acids Res. 2009 Jan;37(Database issue):D824-31. doi: 10.1093/nar/gkn832. Epub 2008 Nov 5.


Algorithms and semantic infrastructure for mutation impact extraction and grounding.

Laurila JB, Naderi N, Witte R, Riazanov A, Kouznetsov A, Baker CJ.

BMC Genomics. 2010 Dec 2;11 Suppl 4:S24. doi: 10.1186/1471-2164-11-S4-S24.


Annotation of protein residues based on a literature analysis: cross-validation against UniProtKb.

Nagel K, Jimeno-Yepes A, Rebholz-Schuhmann D.

BMC Bioinformatics. 2009 Aug 27;10 Suppl 8:S4. doi: 10.1186/1471-2105-10-S8-S4.


Protein kinase resource: an integrated environment for phosphorylation research.

Niedner RH, Buzko OV, Haste NM, Taylor A, Gribskov M, Taylor SS.

Proteins. 2006 Apr 1;63(1):78-86.


EcID. A database for the inference of functional interactions in E. coli.

Andres Leon E, Ezkurdia I, García B, Valencia A, Juan D.

Nucleic Acids Res. 2009 Jan;37(Database issue):D629-35. doi: 10.1093/nar/gkn853. Epub 2008 Nov 12.


Sequence and structure signatures of cancer mutation hotspots in protein kinases.

Dixit A, Yi L, Gowthaman R, Torkamani A, Schork NJ, Verkhivker GM.

PLoS One. 2009 Oct 16;4(10):e7485. doi: 10.1371/journal.pone.0007485.


Automated extraction and semantic analysis of mutation impacts from the biomedical literature.

Naderi N, Witte R.

BMC Genomics. 2012 Jun 18;13 Suppl 4:S10. doi: 10.1186/1471-2164-13-S4-S10.


Identification of similar regions of protein structures using integrated sequence and structure analysis tools.

Peters B, Moad C, Youn E, Buffington K, Heiland R, Mooney S.

BMC Struct Biol. 2006 Mar 9;6:4.


Kin-Driver: a database of driver mutations in protein kinases.

Simonetti FL, Tornador C, Nabau-Moretó N, Molina-Vila MA, Marino-Buslje C.

Database (Oxford). 2014 Nov 19;2014:bau104. doi: 10.1093/database/bau104. Print 2014.


GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.

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