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Results: 1 to 20 of 101

1.

AVISPA: a web tool for the prediction and analysis of alternative splicing.

Barash Y, Vaquero-Garcia J, González-Vallinas J, Xiong HY, Gao W, Lee LJ, Frey BJ.

Genome Biol. 2013;14(10):R114.

PMID:
24156756
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

In silico to in vivo splicing analysis using splicing code models.

Gazzara MR, Vaquero-Garcia J, Lynch KW, Barash Y.

Methods. 2014 May 1;67(1):3-12. doi: 10.1016/j.ymeth.2013.11.006. Epub 2013 Dec 7.

PMID:
24321485
[PubMed - in process]
3.

Non-EST-based prediction of novel alternatively spliced cassette exons with cell signaling function in Caenorhabditis elegans and human.

Leparc GG, Mitra RD.

Nucleic Acids Res. 2007;35(10):3192-202. Epub 2007 Apr 22.

PMID:
17452356
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Mining Arabidopsis thaliana RNA-seq data with Integrated Genome Browser reveals stress-induced alternative splicing of the putative splicing regulator SR45a.

Gulledge AA, Roberts AD, Vora H, Patel K, Loraine AE.

Am J Bot. 2012 Feb;99(2):219-31. doi: 10.3732/ajb.1100355. Epub 2012 Jan 30.

PMID:
22291167
[PubMed - indexed for MEDLINE]
Free Article
5.

Spliceman--a computational web server that predicts sequence variations in pre-mRNA splicing.

Lim KH, Fairbrother WG.

Bioinformatics. 2012 Apr 1;28(7):1031-2. doi: 10.1093/bioinformatics/bts074. Epub 2012 Feb 10.

PMID:
22328782
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

RASE: recognition of alternatively spliced exons in C.elegans.

Rätsch G, Sonnenburg S, Schölkopf B.

Bioinformatics. 2005 Jun;21 Suppl 1:i369-77.

PMID:
15961480
[PubMed - indexed for MEDLINE]
Free Article
7.

ASD: a bioinformatics resource on alternative splicing.

Stamm S, Riethoven JJ, Le Texier V, Gopalakrishnan C, Kumanduri V, Tang Y, Barbosa-Morais NL, Thanaraj TA.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D46-55.

PMID:
16381912
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

HOLLYWOOD: a comparative relational database of alternative splicing.

Holste D, Huo G, Tung V, Burge CB.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D56-62.

PMID:
16381932
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Transcriptome and genome conservation of alternative splicing events in humans and mice.

Sugnet CW, Kent WJ, Ares M Jr, Haussler D.

Pac Symp Biocomput. 2004:66-77.

PMID:
14992493
[PubMed - indexed for MEDLINE]
10.

In silico and in vivo splicing analysis of MLH1 and MSH2 missense mutations shows exon- and tissue-specific effects.

Lastella P, Surdo NC, Resta N, Guanti G, Stella A.

BMC Genomics. 2006 Sep 22;7:243.

PMID:
16995940
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Multiple sequence variants of BRCA2 exon 7 alter splicing regulation.

Gaildrat P, Krieger S, Di Giacomo D, Abdat J, Révillion F, Caputo S, Vaur D, Jamard E, Bohers E, Ledemeney D, Peyrat JP, Houdayer C, Rouleau E, Lidereau R, Frébourg T, Hardouin A, Tosi M, Martins A.

J Med Genet. 2012 Oct;49(10):609-17. doi: 10.1136/jmedgenet-2012-100965. Epub 2012 Sep 7.

PMID:
22962691
[PubMed - indexed for MEDLINE]
12.

A non-EST-based method for exon-skipping prediction.

Sorek R, Shemesh R, Cohen Y, Basechess O, Ast G, Shamir R.

Genome Res. 2004 Aug;14(8):1617-23.

PMID:
15289480
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Intronic alternative splicing regulators identified by comparative genomics in nematodes.

Kabat JL, Barberan-Soler S, McKenna P, Clawson H, Farrer T, Zahler AM.

PLoS Comput Biol. 2006 Jul 14;2(7):e86. Epub 2006 Jun 5.

PMID:
16839192
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Prediction of alternatively skipped exons and splicing enhancers from exon junction arrays.

Kechris K, Yang YH, Yeh RF.

BMC Genomics. 2008 Nov 20;9:551. doi: 10.1186/1471-2164-9-551.

PMID:
19021909
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Genome-wide prediction of cis-acting RNA elements regulating tissue-specific pre-mRNA alternative splicing.

Wang X, Wang K, Radovich M, Wang Y, Wang G, Feng W, Sanford JR, Liu Y.

BMC Genomics. 2009 Jul 7;10 Suppl 1:S4. doi: 10.1186/1471-2164-10-S1-S4.

PMID:
19594881
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

ASD: the Alternative Splicing Database.

Thanaraj TA, Stamm S, Clark F, Riethoven JJ, Le Texier V, Muilu J.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D64-9.

PMID:
14681360
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Non-EST based prediction of exon skipping and intron retention events using Pfam information.

Hiller M, Huse K, Platzer M, Backofen R.

Nucleic Acids Res. 2005 Oct 4;33(17):5611-21. Print 2005.

PMID:
16204458
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Integrating alternative splicing detection into gene prediction.

Foissac S, Schiex T.

BMC Bioinformatics. 2005 Feb 10;6:25.

PMID:
15705189
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Studying alternative splicing regulatory networks through partial correlation analysis.

Chen L, Zheng S.

Genome Biol. 2009;10(1):R3. doi: 10.1186/gb-2009-10-1-r3. Epub 2009 Jan 9.

PMID:
19133160
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

EASED: Extended Alternatively Spliced EST Database.

Pospisil H, Herrmann A, Bortfeldt RH, Reich JG.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D70-4.

PMID:
14681361
[PubMed - indexed for MEDLINE]
Free PMC Article

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