Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 99

1.

Open-Phylo: a customizable crowd-computing platform for multiple sequence alignment.

Kwak D, Kam A, Becerra D, Zhou Q, Hops A, Zarour E, Kam A, Sarmenta L, Blanchette M, Waldispühl J.

Genome Biol. 2013;14(10):R116.

PMID:
24148814
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Phylo: a citizen science approach for improving multiple sequence alignment.

Kawrykow A, Roumanis G, Kam A, Kwak D, Leung C, Wu C, Zarour E; Phylo players, Sarmenta L, Blanchette M, Waldispühl J.

PLoS One. 2012;7(3):e31362. doi: 10.1371/journal.pone.0031362. Epub 2012 Mar 7.

PMID:
22412834
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Distributed sequence alignment applications for the public computing architecture.

Pellicer S, Chen G, Chan KC, Pan Y.

IEEE Trans Nanobioscience. 2008 Mar;7(1):35-43. doi: 10.1109/TNB.2008.2000148.

PMID:
18334454
[PubMed - indexed for MEDLINE]
4.

Optimization techniques for string selection and comparison problems in genomics. Applying integer programming and heuristic algorithms for improved solutions.

Meneses CN, Oliveira CA, Pardalos PM.

IEEE Eng Med Biol Mag. 2005 May-Jun;24(3):81-7. No abstract available.

PMID:
15971845
[PubMed - indexed for MEDLINE]
5.

Accelerated large-scale multiple sequence alignment.

Lloyd S, Snell QO.

BMC Bioinformatics. 2011 Dec 7;12:466. doi: 10.1186/1471-2105-12-466.

PMID:
22151470
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Multiple sequence alignment with arbitrary gap costs: computing an optimal solution using polyhedral combinatorics.

Althaus E, Caprara A, Lenhof HP, Reinert K.

Bioinformatics. 2002;18 Suppl 2:S4-S16.

PMID:
12385977
[PubMed - indexed for MEDLINE]
Free Article
7.

CBESW: sequence alignment on the Playstation 3.

Wirawan A, Kwoh CK, Hieu NT, Schmidt B.

BMC Bioinformatics. 2008 Sep 17;9:377. doi: 10.1186/1471-2105-9-377.

PMID:
18798993
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A min-cut algorithm for the consistency problem in multiple sequence alignment.

Corel E, Pitschi F, Morgenstern B.

Bioinformatics. 2010 Apr 15;26(8):1015-21. doi: 10.1093/bioinformatics/btq082. Epub 2010 Feb 25.

PMID:
20189940
[PubMed - indexed for MEDLINE]
Free Article
9.

A tabu search algorithm for post-processing multiple sequence alignment.

Riaz T, Yi W, Li KB.

J Bioinform Comput Biol. 2005 Feb;3(1):145-56.

PMID:
15751117
[PubMed - indexed for MEDLINE]
10.

Predicting protein structures with a multiplayer online game.

Cooper S, Khatib F, Treuille A, Barbero J, Lee J, Beenen M, Leaver-Fay A, Baker D, Popović Z, Players F.

Nature. 2010 Aug 5;466(7307):756-60. doi: 10.1038/nature09304.

PMID:
20686574
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Making whole genome multiple alignments usable for biologists.

Blankenberg D, Taylor J, Nekrutenko A; Galaxy Team.

Bioinformatics. 2011 Sep 1;27(17):2426-8. doi: 10.1093/bioinformatics/btr398. Epub 2011 Jul 19.

PMID:
21775304
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Statistical power of phylo-HMM for evolutionarily conserved element detection.

Fan X, Zhu J, Schadt EE, Liu JS.

BMC Bioinformatics. 2007 Oct 5;8:374.

PMID:
17919331
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Multiple sequence alignment in parallel on a workstation cluster.

Ebedes J, Datta A.

Bioinformatics. 2004 May 1;20(7):1193-5. Epub 2004 Feb 5.

PMID:
14764554
[PubMed - indexed for MEDLINE]
Free Article
14.

Phylo-mLogo: an interactive and hierarchical multiple-logo visualization tool for alignment of many sequences.

Shih AC, Lee DT, Peng CL, Wu YW.

BMC Bioinformatics. 2007 Feb 24;8:63.

PMID:
17319966
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Segment-based multiple sequence alignment.

Rausch T, Emde AK, Weese D, Döring A, Notredame C, Reinert K.

Bioinformatics. 2008 Aug 15;24(16):i187-92. doi: 10.1093/bioinformatics/btn281.

PMID:
18689823
[PubMed - indexed for MEDLINE]
Free Article
16.

The iRMSD: a local measure of sequence alignment accuracy using structural information.

Armougom F, Moretti S, Keduas V, Notredame C.

Bioinformatics. 2006 Jul 15;22(14):e35-9.

PMID:
16873492
[PubMed - indexed for MEDLINE]
Free Article
17.

Distributed medical image analysis and diagnosis through crowd-sourced games: a malaria case study.

Mavandadi S, Dimitrov S, Feng S, Yu F, Sikora U, Yaglidere O, Padmanabhan S, Nielsen K, Ozcan A.

PLoS One. 2012;7(5):e37245. doi: 10.1371/journal.pone.0037245. Epub 2012 May 11.

PMID:
22606353
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

An overview of multiple sequence alignment.

Simossis V, Kleinjung J, Heringa J.

Curr Protoc Bioinformatics. 2003 Nov;Chapter 3:Unit 3.7. doi: 10.1002/0471250953.bi0307s03. Review.

PMID:
18428699
[PubMed - indexed for MEDLINE]
19.

An analysis of sequence alignment: heuristic algorithms.

Bucak IÖ, Uslan V.

Conf Proc IEEE Eng Med Biol Soc. 2010;2010:1824-7. doi: 10.1109/IEMBS.2010.5626428.

PMID:
21096142
[PubMed - indexed for MEDLINE]
20.

G-InforBIO: integrated system for microbial genomics.

Tanaka N, Abe T, Miyazaki S, Sugawara H.

BMC Bioinformatics. 2006 Aug 4;7:368.

PMID:
16887044
[PubMed - indexed for MEDLINE]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk