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Results: 1 to 20 of 99

1.

High-efficiency RNA cloning enables accurate quantification of miRNA expression by deep sequencing.

Zhang Z, Lee JE, Riemondy K, Anderson EM, Yi R.

Genome Biol. 2013;14(10):R109.

PMID:
24098942
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Identification and profiling of novel microRNAs in the Brassica rapa genome based on small RNA deep sequencing.

Kim B, Yu HJ, Park SG, Shin JY, Oh M, Kim N, Mun JH.

BMC Plant Biol. 2012 Nov 19;12:218. doi: 10.1186/1471-2229-12-218.

PMID:
23163954
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Identification of Taxus microRNAs and their targets with high-throughput sequencing and degradome analysis.

Hao DC, Yang L, Xiao PG, Liu M.

Physiol Plant. 2012 Dec;146(4):388-403. doi: 10.1111/j.1399-3054.2012.01668.x. Epub 2012 Jul 25.

PMID:
22708792
[PubMed - indexed for MEDLINE]
4.

RNA-ligase-dependent biases in miRNA representation in deep-sequenced small RNA cDNA libraries.

Hafner M, Renwick N, Brown M, Mihailović A, Holoch D, Lin C, Pena JT, Nusbaum JD, Morozov P, Ludwig J, Ojo T, Luo S, Schroth G, Tuschl T.

RNA. 2011 Sep;17(9):1697-712. doi: 10.1261/rna.2799511. Epub 2011 Jul 20.

PMID:
21775473
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Genome-wide profiling of novel and conserved Populus microRNAs involved in pathogen stress response by deep sequencing.

Chen L, Ren Y, Zhang Y, Xu J, Zhang Z, Wang Y.

Planta. 2012 May;235(5):873-83. doi: 10.1007/s00425-011-1548-z. Epub 2011 Nov 19.

PMID:
22101925
[PubMed - indexed for MEDLINE]
6.

Identifying RNA editing sites in miRNAs by deep sequencing.

Alon S, Eisenberg E.

Methods Mol Biol. 2013;1038:159-70. doi: 10.1007/978-1-62703-514-9_9.

PMID:
23872974
[PubMed - indexed for MEDLINE]
7.

High-throughput multiplex sequencing of miRNA.

Vigneault F, Ter-Ovanesyan D, Alon S, Eminaga S, C Christodoulou D, Seidman JG, Eisenberg E, M Church G.

Curr Protoc Hum Genet. 2012 Apr;Chapter 11:Unit 11.12.1-10. doi: 10.1002/0471142905.hg1112s73.

PMID:
22470142
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

MicroRNA expression signatures of bladder cancer revealed by deep sequencing.

Han Y, Chen J, Zhao X, Liang C, Wang Y, Sun L, Jiang Z, Zhang Z, Yang R, Chen J, Li Z, Tang A, Li X, Ye J, Guan Z, Gui Y, Cai Z.

PLoS One. 2011 Mar 28;6(3):e18286. doi: 10.1371/journal.pone.0018286.

PMID:
21464941
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Characterization and comparative analysis of small RNAs in three small RNA libraries of the brown planthopper (Nilaparvata lugens).

Chen Q, Lu L, Hua H, Zhou F, Lu L, Lin Y.

PLoS One. 2012;7(3):e32860. doi: 10.1371/journal.pone.0032860. Epub 2012 Mar 6.

PMID:
22412935
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

High-throughput sequencing of RNA silencing-associated small RNAs in olive (Olea europaea L.).

Donaire L, Pedrola L, Rosa Rde L, Llave C.

PLoS One. 2011;6(11):e27916. doi: 10.1371/journal.pone.0027916. Epub 2011 Nov 28.

PMID:
22140484
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Sequencing bias: comparison of different protocols of microRNA library construction.

Tian G, Yin X, Luo H, Xu X, Bolund L, Zhang X, Gan SQ, Li N.

BMC Biotechnol. 2010 Sep 6;10:64. doi: 10.1186/1472-6750-10-64. Erratum in: BMC Biotechnol. 2011;11:48. Gan, Shang-Quang [added]; Li, Ning [added].

PMID:
20815927
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genome-wide identification of microRNAs in Medicago truncatula by high-throughput sequencing.

Wang TZ, Zhang WH.

Methods Mol Biol. 2013;1069:67-80. doi: 10.1007/978-1-62703-613-9_6.

PMID:
23996309
[PubMed - indexed for MEDLINE]
13.

A combined approach of high-throughput sequencing and degradome analysis reveals tissue specific expression of microRNAs and their targets in cucumber.

Mao W, Li Z, Xia X, Li Y, Yu J.

PLoS One. 2012;7(3):e33040. doi: 10.1371/journal.pone.0033040. Epub 2012 Mar 30.

PMID:
22479356
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

MicroRNAs in Amoebozoa: deep sequencing of the small RNA population in the social amoeba Dictyostelium discoideum reveals developmentally regulated microRNAs.

Avesson L, Reimegård J, Wagner EG, Söderbom F.

RNA. 2012 Oct;18(10):1771-82. doi: 10.1261/rna.033175.112. Epub 2012 Aug 8.

PMID:
22875808
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Genome-wide microRNA expression analysis of clear cell renal cell carcinoma by next generation deep sequencing.

Osanto S, Qin Y, Buermans HP, Berkers J, Lerut E, Goeman JJ, van Poppel H.

PLoS One. 2012;7(6):e38298. doi: 10.1371/journal.pone.0038298. Epub 2012 Jun 20.

PMID:
22745662
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Identification and characterization of microRNAs in Phaseolus vulgaris by high-throughput sequencing.

Peláez P, Trejo MS, Iñiguez LP, Estrada-Navarrete G, Covarrubias AA, Reyes JL, Sanchez F.

BMC Genomics. 2012 Mar 6;13:83. doi: 10.1186/1471-2164-13-83.

PMID:
22394504
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Barcoded cDNA library preparation for small RNA profiling by next-generation sequencing.

Hafner M, Renwick N, Farazi TA, Mihailović A, Pena JT, Tuschl T.

Methods. 2012 Oct;58(2):164-70. doi: 10.1016/j.ymeth.2012.07.030. Epub 2012 Aug 7.

PMID:
22885844
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Bioinformatic analysis of barcoded cDNA libraries for small RNA profiling by next-generation sequencing.

Farazi TA, Brown M, Morozov P, Ten Hoeve JJ, Ben-Dov IZ, Hovestadt V, Hafner M, Renwick N, Mihailović A, Wessels LF, Tuschl T.

Methods. 2012 Oct;58(2):171-87. doi: 10.1016/j.ymeth.2012.07.020. Epub 2012 Jul 23.

PMID:
22836126
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Characterization of microRNAs in mud crab Scylla paramamosain under Vibrio parahaemolyticus infection.

Li S, Zhu S, Li C, Zhang Z, Zhou L, Wang S, Wang S, Zhang Y, Wen X.

PLoS One. 2013 Aug 30;8(8):e73392. doi: 10.1371/journal.pone.0073392. eCollection 2013.

PMID:
24023678
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing.

Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS.

BMC Plant Biol. 2011 Jan 10;11:5. doi: 10.1186/1471-2229-11-5.

PMID:
21219599
[PubMed - indexed for MEDLINE]
Free PMC Article

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