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Results: 1 to 20 of 99

1.

Cytosine methylation changes in enhancer regions of core pro-fibrotic genes characterize kidney fibrosis development.

Ko YA, Mohtat D, Suzuki M, Park AS, Izquierdo MC, Han SY, Kang HM, Si H, Hostetter T, Pullman JM, Fazzari M, Verma A, Zheng D, Greally JM, Susztak K.

Genome Biol. 2013;14(10):R108.

PMID:
24098934
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Tissue-specific differences in cytosine methylation and their association with differential gene expression in sorghum.

Zhang M, Xu C, von Wettstein D, Liu B.

Plant Physiol. 2011 Aug;156(4):1955-66. doi: 10.1104/pp.111.176842. Epub 2011 Jun 1.

PMID:
21632971
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

CpG methylation of half-CRE sequences creates C/EBPalpha binding sites that activate some tissue-specific genes.

Rishi V, Bhattacharya P, Chatterjee R, Rozenberg J, Zhao J, Glass K, Fitzgerald P, Vinson C.

Proc Natl Acad Sci U S A. 2010 Nov 23;107(47):20311-6. doi: 10.1073/pnas.1008688107. Epub 2010 Nov 8.

PMID:
21059933
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Analysis of the DNA methylome and transcriptome in granulopoiesis reveals timed changes and dynamic enhancer methylation.

Rönnerblad M, Andersson R, Olofsson T, Douagi I, Karimi M, Lehmann S, Hoof I, de Hoon M, Itoh M, Nagao-Sato S, Kawaji H, Lassmann T, Carninci P, Hayashizaki Y, Forrest AR, Sandelin A, Ekwall K, Arner E, Lennartsson A; FANTOM consortium.

Blood. 2014 Apr 24;123(17):e79-89. doi: 10.1182/blood-2013-02-482893. Epub 2014 Mar 26.

PMID:
24671952
[PubMed - indexed for MEDLINE]
5.

Tissue-specific dysregulation of DNA methylation in aging.

Thompson RF, Atzmon G, Gheorghe C, Liang HQ, Lowes C, Greally JM, Barzilai N.

Aging Cell. 2010 Aug;9(4):506-18. doi: 10.1111/j.1474-9726.2010.00577.x. Epub 2010 May 22.

PMID:
20497131
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Elucidating the landscape of aberrant DNA methylation in hepatocellular carcinoma.

Song MA, Tiirikainen M, Kwee S, Okimoto G, Yu H, Wong LL.

PLoS One. 2013;8(2):e55761. doi: 10.1371/journal.pone.0055761. Epub 2013 Feb 20.

PMID:
23437062
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Genome-wide analysis of the p53 gene regulatory network in the developing mouse kidney.

Li Y, Liu J, McLaughlin N, Bachvarov D, Saifudeen Z, El-Dahr SS.

Physiol Genomics. 2013 Oct 16;45(20):948-64. doi: 10.1152/physiolgenomics.00113.2013. Epub 2013 Sep 3.

PMID:
24003036
[PubMed - indexed for MEDLINE]
8.

Late-replicating heterochromatin is characterized by decreased cytosine methylation in the human genome.

Suzuki M, Oda M, Ramos MP, Pascual M, Lau K, Stasiek E, Agyiri F, Thompson RF, Glass JL, Jing Q, Sandstrom R, Fazzari MJ, Hansen RS, Stamatoyannopoulos JA, McLellan AS, Greally JM.

Genome Res. 2011 Nov;21(11):1833-40. doi: 10.1101/gr.116509.110. Epub 2011 Sep 28.

PMID:
21957152
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

DNA cytosine methylation in plant development.

Zhang M, Kimatu JN, Xu K, Liu B.

J Genet Genomics. 2010 Jan;37(1):1-12. doi: 10.1016/S1673-8527(09)60020-5. Review.

PMID:
20171573
[PubMed - indexed for MEDLINE]
10.

A comparative transcriptome analysis identifying FGF23 regulated genes in the kidney of a mouse CKD model.

Dai B, David V, Martin A, Huang J, Li H, Jiao Y, Gu W, Quarles LD.

PLoS One. 2012;7(9):e44161. doi: 10.1371/journal.pone.0044161. Epub 2012 Sep 6.

PMID:
22970174
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Understanding the epigenetic syntax for the genetic alphabet in the kidney.

Susztak K.

J Am Soc Nephrol. 2014 Jan;25(1):10-7. doi: 10.1681/ASN.2013050461. Epub 2013 Oct 31. Review.

PMID:
24179169
[PubMed - indexed for MEDLINE]
12.

The in vivo dissection of direct RFX-target gene promoters in C. elegans reveals a novel cis-regulatory element, the C-box.

Burghoorn J, Piasecki BP, Crona F, Phirke P, Jeppsson KE, Swoboda P.

Dev Biol. 2012 Aug 15;368(2):415-26. doi: 10.1016/j.ydbio.2012.05.033. Epub 2012 Jun 5.

PMID:
22683808
[PubMed - indexed for MEDLINE]
Free Article
13.

Identification of novel DNA-methylated genes that correlate with human prostate cancer and high-grade prostatic intraepithelial neoplasia.

Devaney JM, Wang S, Funda S, Long J, Taghipour DJ, Tbaishat R, Furbert-Harris P, Ittmann M, Kwabi-Addo B.

Prostate Cancer Prostatic Dis. 2013 Dec;16(4):292-300. doi: 10.1038/pcan.2013.21. Epub 2013 Jul 30.

PMID:
23896626
[PubMed - indexed for MEDLINE]
14.

Epigenomics: the science of no-longer-junk DNA. Why study it in chronic kidney disease?

Ko YA, Susztak K.

Semin Nephrol. 2013 Jul;33(4):354-62. doi: 10.1016/j.semnephrol.2013.05.007. Review.

PMID:
24011577
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Lsh, chromatin remodeling family member, modulates genome-wide cytosine methylation patterns at nonrepeat sequences.

Tao Y, Xi S, Shan J, Maunakea A, Che A, Briones V, Lee EY, Geiman T, Huang J, Stephens R, Leighty RM, Zhao K, Muegge K.

Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5626-31. doi: 10.1073/pnas.1017000108. Epub 2011 Mar 22. Erratum in: Proc Natl Acad Sci U S A. 2011 Sep 13;108(37):15535.

PMID:
21427231
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Genome-wide profiling of DNA methylation reveals a class of normally methylated CpG island promoters.

Shen L, Kondo Y, Guo Y, Zhang J, Zhang L, Ahmed S, Shu J, Chen X, Waterland RA, Issa JP.

PLoS Genet. 2007 Oct;3(10):2023-36. Epub 2007 Sep 10.

PMID:
17967063
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

D-Serine exposure resulted in gene expression changes indicative of activation of fibrogenic pathways and down-regulation of energy metabolism and oxidative stress response.

Soto A, DelRaso NJ, Schlager JJ, Chan VT.

Toxicology. 2008 Jan 14;243(1-2):177-92. Epub 2007 Oct 23.

PMID:
18061331
[PubMed - indexed for MEDLINE]
18.

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning.

Cokus SJ, Feng S, Zhang X, Chen Z, Merriman B, Haudenschild CD, Pradhan S, Nelson SF, Pellegrini M, Jacobsen SE.

Nature. 2008 Mar 13;452(7184):215-9. doi: 10.1038/nature06745. Epub 2008 Feb 17.

PMID:
18278030
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Cytosine methylation profiling of cancer cell lines.

Ehrich M, Turner J, Gibbs P, Lipton L, Giovanneti M, Cantor C, van den Boom D.

Proc Natl Acad Sci U S A. 2008 Mar 25;105(12):4844-9. doi: 10.1073/pnas.0712251105. Epub 2008 Mar 19.

PMID:
18353987
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

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