Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 93

1.

On the design of clone-based haplotyping.

Lo C, Liu R, Lee J, Robasky K, Byrne S, Lucchesi C, Aach J, Church G, Bafna V, Zhang K.

Genome Biol. 2013;14(9):R100.

PMID:
24028704
[PubMed - in process]
Free PMC Article
2.

MixSIH: a mixture model for single individual haplotyping.

Matsumoto H, Kiryu H.

BMC Genomics. 2013;14 Suppl 2:S5. doi: 10.1186/1471-2164-14-S2-S5. Epub 2013 Feb 15.

PMID:
23445519
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Strobe sequence design for haplotype assembly.

Lo C, Bashir A, Bansal V, Bafna V.

BMC Bioinformatics. 2011 Feb 15;12 Suppl 1:S24. doi: 10.1186/1471-2105-12-S1-S24.

PMID:
21342554
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Optimal algorithms for haplotype assembly from whole-genome sequence data.

He D, Choi A, Pipatsrisawat K, Darwiche A, Eskin E.

Bioinformatics. 2010 Jun 15;26(12):i183-90. doi: 10.1093/bioinformatics/btq215.

PMID:
20529904
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Whole-genome haplotyping by dilution, amplification, and sequencing.

Kaper F, Swamy S, Klotzle B, Munchel S, Cottrell J, Bibikova M, Chuang HY, Kruglyak S, Ronaghi M, Eberle MA, Fan JB.

Proc Natl Acad Sci U S A. 2013 Apr 2;110(14):5552-7. doi: 10.1073/pnas.1218696110. Epub 2013 Mar 18.

PMID:
23509297
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Sequencing of isolated sperm cells for direct haplotyping of a human genome.

Kirkness EF, Grindberg RV, Yee-Greenbaum J, Marshall CR, Scherer SW, Lasken RS, Venter JC.

Genome Res. 2013 May;23(5):826-32. doi: 10.1101/gr.144600.112. Epub 2013 Jan 2.

PMID:
23282328
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

A fast and accurate algorithm for diploid individual haplotype reconstruction.

Wu J, Liang B.

J Bioinform Comput Biol. 2013 Aug;11(4):1350010. doi: 10.1142/S0219720013500108. Epub 2013 Jun 30.

PMID:
23859274
[PubMed - indexed for MEDLINE]
8.

Sequencing of 6.7 Mb of the melon genome using a BAC pooling strategy.

González VM, Benjak A, Hénaff EM, Mir G, Casacuberta JM, Garcia-Mas J, Puigdomènech P.

BMC Plant Biol. 2010 Nov 12;10:246. doi: 10.1186/1471-2229-10-246.

PMID:
21073723
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Integrating dilution-based sequencing and population genotypes for single individual haplotyping.

Matsumoto H, Kiryu H.

BMC Genomics. 2014 Aug 28;15:733. doi: 10.1186/1471-2164-15-733.

PMID:
25167975
[PubMed - in process]
Free Article
10.

Fosmid-based whole genome haplotyping of a HapMap trio child: evaluation of Single Individual Haplotyping techniques.

Duitama J, McEwen GK, Huebsch T, Palczewski S, Schulz S, Verstrepen K, Suk EK, Hoehe MR.

Nucleic Acids Res. 2012 Mar;40(5):2041-53. doi: 10.1093/nar/gkr1042. Epub 2011 Nov 18.

PMID:
22102577
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A fast and accurate algorithm for single individual haplotyping.

Xie M, Wang J, Jiang T.

BMC Syst Biol. 2012;6 Suppl 2:S8. doi: 10.1186/1752-0509-6-S2-S8. Epub 2012 Dec 12.

PMID:
23282221
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Clone-based systematic haplotyping (CSH): a procedure for physical haplotyping of whole genomes.

Burgtorf C, Kepper P, Hoehe M, Schmitt C, Reinhardt R, Lehrach H, Sauer S.

Genome Res. 2003 Dec;13(12):2717-24. Erratum in: Genome Res. 2004 Feb;14(4):327.

PMID:
14656974
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

An MCMC algorithm for haplotype assembly from whole-genome sequence data.

Bansal V, Halpern AL, Axelrod N, Bafna V.

Genome Res. 2008 Aug;18(8):1336-46. doi: 10.1101/gr.077065.108.

PMID:
18676820
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Whole Genome Profiling provides a robust framework for physical mapping and sequencing in the highly complex and repetitive wheat genome.

Philippe R, Choulet F, Paux E, van Oeveren J, Tang J, Wittenberg AH, Janssen A, van Eijk MJ, Stormo K, Alberti A, Wincker P, Akhunov E, van der Vossen E, Feuillet C.

BMC Genomics. 2012 Jan 30;13:47. doi: 10.1186/1471-2164-13-47.

PMID:
22289472
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation.

Kelleher CT, Chiu R, Shin H, Bosdet IE, Krzywinski MI, Fjell CD, Wilkin J, Yin T, DiFazio SP, Ali J, Asano JK, Chan S, Cloutier A, Girn N, Leach S, Lee D, Mathewson CA, Olson T, O'connor K, Prabhu AL, Smailus DE, Stott JM, Tsai M, Wye NH, Yang GS, Zhuang J, Holt RA, Putnam NH, Vrebalov J, Giovannoni JJ, Grimwood J, Schmutz J, Rokhsar D, Jones SJ, Marra MA, Tuskan GA, Bohlmann J, Ellis BE, Ritland K, Douglas CJ, Schein JE.

Plant J. 2007 Jun;50(6):1063-78. Epub 2007 May 3.

PMID:
17488239
[PubMed - indexed for MEDLINE]
16.

Analysis of sequence-tagged-connector strategies for DNA sequencing.

Siegel AF, Trask B, Roach JC, Mahairas GG, Hood L, van den Engh G.

Genome Res. 1999 Mar;9(3):297-307.

PMID:
10077536
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Maximum likelihood model based on minor allele frequencies and weighted Max-SAT formulation for haplotype assembly.

Mousavi SR, Khodadadi I, Falsafain H, Nadimi R, Ghadiri N.

J Theor Biol. 2014 Jun 7;350:49-56. doi: 10.1016/j.jtbi.2014.01.036. Epub 2014 Jan 31.

PMID:
24491253
[PubMed - in process]
18.

Construction of Japanese BAC library Yamato-2 (JY2): a set of 330K clone resources of damage-minimized DNA taken from a genetically established Japanese individual.

Terabayashi Y, Morita K, Park JY, Saito S, Shiina T, Inoko H, Ishiwata I, Fujimori KE, Hirano T.

Hum Cell. 2011 Dec;24(4):135-45. doi: 10.1007/s13577-011-0019-y. Epub 2011 May 25.

PMID:
21611881
[PubMed - indexed for MEDLINE]
19.

An effective haplotype assembly algorithm based on hypergraph partitioning.

Chen X, Peng Q, Han L, Zhong T, Xu T.

J Theor Biol. 2014 Oct 7;358:85-92. doi: 10.1016/j.jtbi.2014.05.034. Epub 2014 Jun 2.

PMID:
24954019
[PubMed - in process]
20.

A model of higher accuracy for the individual haplotyping problem based on weighted SNP fragments and genotype with errors.

Xie M, Wang J, Chen J.

Bioinformatics. 2008 Jul 1;24(13):i105-13. doi: 10.1093/bioinformatics/btn147.

PMID:
18586702
[PubMed - indexed for MEDLINE]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk