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Results: 1 to 20 of 96

1.

Web Apollo: a web-based genomic annotation editing platform.

Lee E, Helt GA, Reese JT, Munoz-Torres MC, Childers CP, Buels RM, Stein L, Holmes IH, Elsik CG, Lewis SE.

Genome Biol. 2013 Aug 30;14(8):R93. doi: 10.1186/gb-2013-14-8-r93.

PMID:
24000942
[PubMed - in process]
Free PMC Article
2.

Apollo2Go: a web service adapter for the Apollo genome viewer to enable distributed genome annotation.

Klee K, Ernst R, Spannagl M, Mayer KF.

BMC Bioinformatics. 2007 Aug 30;8:320.

PMID:
17760972
[PubMed - indexed for MEDLINE]
Free PMC Article
3.
4.

CGAS: a comparative genome annotation system.

Choi K, Yang Y, Kim S.

Methods Mol Biol. 2007;395:133-46.

PMID:
17993671
[PubMed - indexed for MEDLINE]
5.

PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.

Fong C, Rohmer L, Radey M, Wasnick M, Brittnacher MJ.

BMC Bioinformatics. 2008 Mar 26;9:170. doi: 10.1186/1471-2105-9-170.

PMID:
18366802
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

GenColors: annotation and comparative genomics of prokaryotes made easy.

Romualdi A, Felder M, Rose D, Gausmann U, Schilhabel M, Glöckner G, Platzer M, Sühnel J.

Methods Mol Biol. 2007;395:75-96.

PMID:
17993668
[PubMed - indexed for MEDLINE]
7.

A brief introduction to web-based genome browsers.

Wang J, Kong L, Gao G, Luo J.

Brief Bioinform. 2013 Mar;14(2):131-43. doi: 10.1093/bib/bbs029. Epub 2012 Jul 3. Review.

PMID:
22764121
[PubMed - indexed for MEDLINE]
8.

Accessing the SEED genome databases via Web services API: tools for programmers.

Disz T, Akhter S, Cuevas D, Olson R, Overbeek R, Vonstein V, Stevens R, Edwards RA.

BMC Bioinformatics. 2010 Jun 14;11:319. doi: 10.1186/1471-2105-11-319.

PMID:
20546611
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

MicroScope: a platform for microbial genome annotation and comparative genomics.

Vallenet D, Engelen S, Mornico D, Cruveiller S, Fleury L, Lajus A, Rouy Z, Roche D, Salvignol G, Scarpelli C, Médigue C.

Database (Oxford). 2009;2009:bap021. Epub 2009 Nov 25.

PMID:
20157493
[PubMed]
Free PMC Article
10.

CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences.

Liu C, Shi L, Zhu Y, Chen H, Zhang J, Lin X, Guan X.

BMC Genomics. 2012 Dec 20;13:715. doi: 10.1186/1471-2164-13-715.

PMID:
23256920
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Bovine Genome Database: integrated tools for genome annotation and discovery.

Childers CP, Reese JT, Sundaram JP, Vile DC, Dickens CM, Childs KL, Salih H, Bennett AK, Hagen DE, Adelson DL, Elsik CG.

Nucleic Acids Res. 2011 Jan;39(Database issue):D830-4. doi: 10.1093/nar/gkq1235. Epub 2010 Dec 1.

PMID:
21123190
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Bovine Genome Database: supporting community annotation and analysis of the Bos taurus genome.

Reese JT, Childers CP, Sundaram JP, Dickens CM, Childs KL, Vile DC, Elsik CG.

BMC Genomics. 2010 Nov 19;11:645. doi: 10.1186/1471-2164-11-645.

PMID:
21092105
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

GI-POP: a combinational annotation and genomic island prediction pipeline for ongoing microbial genome projects.

Lee CC, Chen YP, Yao TJ, Ma CY, Lo WC, Lyu PC, Tang CY.

Gene. 2013 Apr 10;518(1):114-23. doi: 10.1016/j.gene.2012.11.063. Epub 2013 Jan 12.

PMID:
23318308
[PubMed - indexed for MEDLINE]
14.

Genome Maps, a new generation genome browser.

Medina I, Salavert F, Sanchez R, de Maria A, Alonso R, Escobar P, Bleda M, Dopazo J.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W41-6. doi: 10.1093/nar/gkt530. Epub 2013 Jun 8.

PMID:
23748955
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

High-throughput physical mapping of chromosomes using automated in situ hybridization.

George P, Sharakhova MV, Sharakhov IV.

J Vis Exp. 2012 Jun 28;(64). pii: 4007. doi: 10.3791/4007.

PMID:
22782181
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes.

Cruveiller S, Le Saux J, Vallenet D, Lajus A, Bocs S, Médigue C.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W471-9.

PMID:
15980515
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

GenColors: accelerated comparative analysis and annotation of prokaryotic genomes at various stages of completeness.

Romualdi A, Siddiqui R, Glöckner G, Lehmann R, Sühnel J.

Bioinformatics. 2005 Sep 15;21(18):3669-71. Epub 2005 Aug 2.

PMID:
16076887
[PubMed - indexed for MEDLINE]
Free Article
18.

VIGOR, an annotation program for small viral genomes.

Wang S, Sundaram JP, Spiro D.

BMC Bioinformatics. 2010 Sep 7;11:451. doi: 10.1186/1471-2105-11-451.

PMID:
20822531
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Apollo: a sequence annotation editor.

Lewis SE, Searle SM, Harris N, Gibson M, Lyer V, Richter J, Wiel C, Bayraktaroglir L, Birney E, Crosby MA, Kaminker JS, Matthews BB, Prochnik SE, Smithy CD, Tupy JL, Rubin GM, Misra S, Mungall CJ, Clamp ME.

Genome Biol. 2002;3(12):RESEARCH0082. Epub 2002 Dec 23. Review.

PMID:
12537571
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Algal Functional Annotation Tool: a web-based analysis suite to functionally interpret large gene lists using integrated annotation and expression data.

Lopez D, Casero D, Cokus SJ, Merchant SS, Pellegrini M.

BMC Bioinformatics. 2011 Jul 12;12:282. doi: 10.1186/1471-2105-12-282.

PMID:
21749710
[PubMed - indexed for MEDLINE]
Free PMC Article

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