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Results: 1 to 20 of 94

1.

A global profiling of uncapped mRNAs under cold stress reveals specific decay patterns and endonucleolytic cleavages in Brachypodium distachyon.

Zhang J, Mao Z, Chong K.

Genome Biol. 2013 Aug 30;14(8):R92. doi: 10.1186/gb-2013-14-8-r92.

PMID:
24000894
[PubMed - in process]
Free PMC Article
2.

Transcriptome-wide analysis of uncapped mRNAs in Arabidopsis reveals regulation of mRNA degradation.

Jiao Y, Riechmann JL, Meyerowitz EM.

Plant Cell. 2008 Oct;20(10):2571-85. doi: 10.1105/tpc.108.062786. Epub 2008 Oct 24.

PMID:
18952771
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response.

Zhang J, Xu Y, Huan Q, Chong K.

BMC Genomics. 2009 Sep 23;10:449. doi: 10.1186/1471-2164-10-449.

PMID:
19772667
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Comparative analyses reveal potential uses of Brachypodium distachyon as a model for cold stress responses in temperate grasses.

Li C, Rudi H, Stockinger EJ, Cheng H, Cao M, Fox SE, Mockler TC, Westereng B, Fjellheim S, Rognli OA, Sandve SR.

BMC Plant Biol. 2012 May 8;12:65. doi: 10.1186/1471-2229-12-65.

PMID:
22569006
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Global mRNA decay analysis at single nucleotide resolution reveals segmental and positional degradation patterns in a Gram-positive bacterium.

Kristoffersen SM, Haase C, Weil MR, Passalacqua KD, Niazi F, Hutchison SK, Desany B, Kolstø AB, Tourasse NJ, Read TD, Økstad OA.

Genome Biol. 2012 Apr 26;13(4):R30. doi: 10.1186/gb-2012-13-4-r30.

PMID:
22537947
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Genome-wide survey of cold stress regulated alternative splicing in Arabidopsis thaliana with tiling microarray.

Leviatan N, Alkan N, Leshkowitz D, Fluhr R.

PLoS One. 2013 Jun 11;8(6):e66511. doi: 10.1371/journal.pone.0066511. Print 2013.

PMID:
23776682
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Comparative analysis of the cold acclimation and freezing tolerance capacities of seven diploid Brachypodium distachyon accessions.

Colton-Gagnon K, Ali-Benali MA, Mayer BF, Dionne R, Bertrand A, Do Carmo S, Charron JB.

Ann Bot. 2014 Mar;113(4):681-93. doi: 10.1093/aob/mct283. Epub 2013 Dec 8.

PMID:
24323247
[PubMed - in process]
Free PMC Article
8.

Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon.

Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ.

Genome Biol. 2013 Dec 24;14(12):R145. doi: 10.1186/gb-2013-14-12-r145.

PMID:
24367943
[PubMed - in process]
Free PMC Article
9.

Posttranscriptional control of photosynthetic mRNA decay under stress conditions requires 3' and 5' untranslated regions and correlates with differential polysome association in rice.

Park SH, Chung PJ, Juntawong P, Bailey-Serres J, Kim YS, Jung H, Bang SW, Kim YK, Do Choi Y, Kim JK.

Plant Physiol. 2012 Jul;159(3):1111-24. doi: 10.1104/pp.112.194928. Epub 2012 May 7. Erratum in: Plant Physiol. 2012 Oct;160(2):1145.

PMID:
22566494
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Transcriptome profiling reveals differential transcript abundance in response to chilling stress in Populus simonii.

Song Y, Chen Q, Ci D, Zhang D.

Plant Cell Rep. 2013 Sep;32(9):1407-25. doi: 10.1007/s00299-013-1454-x. Epub 2013 May 8.

PMID:
23652820
[PubMed - indexed for MEDLINE]
11.

Genome-wide profiling of uncapped mRNA.

Jiao Y, Riechmann JL.

Methods Mol Biol. 2012;876:207-16. doi: 10.1007/978-1-61779-809-2_17.

PMID:
22576098
[PubMed - indexed for MEDLINE]
12.

MicroRNA-mediated gene regulation plays a minor role in the transcriptomic plasticity of cold-acclimated zebrafish brain tissue.

Yang R, Dai Z, Chen S, Chen L.

BMC Genomics. 2011 Dec 14;12:605. doi: 10.1186/1471-2164-12-605.

PMID:
22168751
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Comparative EST transcript profiling of peach fruits under different post-harvest conditions reveals candidate genes associated with peach fruit quality.

Vizoso P, Meisel LA, Tittarelli A, Latorre M, Saba J, Caroca R, Maldonado J, Cambiazo V, Campos-Vargas R, Gonzalez M, Orellana A, Silva H.

BMC Genomics. 2009 Sep 10;10:423. doi: 10.1186/1471-2164-10-423.

PMID:
19744325
[PubMed - indexed for MEDLINE]
Free PMC Article
14.
15.

Transcriptome-wide analysis of vernalization reveals conserved and species-specific mechanisms in Brachypodium.

Huan Q, Mao Z, Zhang J, Xu Y, Chong K.

J Integr Plant Biol. 2013 Aug;55(8):696-709. doi: 10.1111/jipb.12050. Epub 2013 Jun 12.

PMID:
23551346
[PubMed - indexed for MEDLINE]
16.

Global analysis of mRNA decay intermediates in Saccharomyces cerevisiae.

Harigaya Y, Parker R.

Proc Natl Acad Sci U S A. 2012 Jul 17;109(29):11764-9. doi: 10.1073/pnas.1119741109. Epub 2012 Jun 29.

PMID:
22752303
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Transcriptome profiling of low temperature-treated cassava apical shoots showed dynamic responses of tropical plant to cold stress.

An D, Yang J, Zhang P.

BMC Genomics. 2012 Feb 10;13:64. doi: 10.1186/1471-2164-13-64.

PMID:
22321773
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Degradation of apolipoprotein II mRNA occurs via endonucleolytic cleavage at 5'-AAU-3'/5'-UAA-3' elements in single-stranded loop domains of the 3'-noncoding region.

Binder R, Hwang SP, Ratnasabapathy R, Williams DL.

J Biol Chem. 1989 Oct 5;264(28):16910-8.

PMID:
2550465
[PubMed - indexed for MEDLINE]
Free Article
19.

Large-scale mRNA expression profiling in the common ice plant, Mesembryanthemum crystallinum, performing C3 photosynthesis and Crassulacean acid metabolism (CAM).

Cushman JC, Tillett RL, Wood JA, Branco JM, Schlauch KA.

J Exp Bot. 2008;59(7):1875-94. doi: 10.1093/jxb/ern008. Epub 2008 Mar 3.

PMID:
18319238
[PubMed - indexed for MEDLINE]
Free Article
20.

Premature translational termination triggers mRNA decapping.

Muhlrad D, Parker R.

Nature. 1994 Aug 18;370(6490):578-81.

PMID:
8052314
[PubMed - indexed for MEDLINE]

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