Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 93

1.

BreakTrans: uncovering the genomic architecture of gene fusions.

Chen K, Navin NE, Wang Y, Schmidt HK, Wallis JW, Niu B, Fan X, Zhao H, McLellan MD, Hoadley KA, Mardis ER, Ley TJ, Perou CM, Wilson RK, Ding L.

Genome Biol. 2013 Aug 23;14(8):R87. doi: 10.1186/gb-2013-14-8-r87.

PMID:
23972288
[PubMed - in process]
Free PMC Article
2.

Breakpoint analysis of transcriptional and genomic profiles uncovers novel gene fusions spanning multiple human cancer types.

Giacomini CP, Sun S, Varma S, Shain AH, Giacomini MM, Balagtas J, Sweeney RT, Lai E, Del Vecchio CA, Forster AD, Clarke N, Montgomery KD, Zhu S, Wong AJ, van de Rijn M, West RB, Pollack JR.

PLoS Genet. 2013 Apr;9(4):e1003464. doi: 10.1371/journal.pgen.1003464. Epub 2013 Apr 25.

PMID:
23637631
[PubMed - in process]
Free PMC Article
3.

Identification of gene fusion transcripts by transcriptome sequencing in BRCA1-mutated breast cancers and cell lines.

Ha KC, Lalonde E, Li L, Cavallone L, Natrajan R, Lambros MB, Mitsopoulos C, Hakas J, Kozarewa I, Fenwick K, Lord CJ, Ashworth A, Vincent-Salomon A, Basik M, Reis-Filho JS, Majewski J, Foulkes WD.

BMC Med Genomics. 2011 Oct 27;4:75. doi: 10.1186/1755-8794-4-75.

PMID:
22032724
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The use of ultra-dense array CGH analysis for the discovery of micro-copy number alterations and gene fusions in the cancer genome.

Przybytkowski E, Ferrario C, Basik M.

BMC Med Genomics. 2011 Jan 27;4:16. doi: 10.1186/1755-8794-4-16.

PMID:
21272361
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples.

Nacu S, Yuan W, Kan Z, Bhatt D, Rivers CS, Stinson J, Peters BA, Modrusan Z, Jung K, Seshagiri S, Wu TD.

BMC Med Genomics. 2011 Jan 24;4:11. doi: 10.1186/1755-8794-4-11.

PMID:
21261984
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Next-generation sequencing reveals novel rare fusion events with functional implication in prostate cancer.

Teles Alves I, Hartjes T, McClellan E, Hiltemann S, Böttcher R, Dits N, Temanni MR, Janssen B, van Workum W, van der Spek P, Stubbs A, de Klein A, Eussen B, Trapman J, Jenster G.

Oncogene. 2014 Feb 3. doi: 10.1038/onc.2013.591. [Epub ahead of print]

PMID:
24488012
[PubMed - as supplied by publisher]
7.

deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data.

McPherson A, Hormozdiari F, Zayed A, Giuliany R, Ha G, Sun MG, Griffith M, Heravi Moussavi A, Senz J, Melnyk N, Pacheco M, Marra MA, Hirst M, Nielsen TO, Sahinalp SC, Huntsman D, Shah SP.

PLoS Comput Biol. 2011 May;7(5):e1001138. doi: 10.1371/journal.pcbi.1001138. Epub 2011 May 19.

PMID:
21625565
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Detecting and visualizing gene fusions.

Supper J, Gugenmus C, Wollnik J, Drueke T, Scherf M, Hahn A, Grote K, Bretschneider N, Klocke B, Zinser C, Cartharius K, Seifert M.

Methods. 2013 Jan;59(1):S24-8. doi: 10.1016/j.ymeth.2012.09.013. Epub 2012 Oct 2.

PMID:
23036331
[PubMed - indexed for MEDLINE]
Free Article
9.

Comrad: detection of expressed rearrangements by integrated analysis of RNA-Seq and low coverage genome sequence data.

McPherson A, Wu C, Hajirasouliha I, Hormozdiari F, Hach F, Lapuk A, Volik S, Shah S, Collins C, Sahinalp SC.

Bioinformatics. 2011 Jun 1;27(11):1481-8. doi: 10.1093/bioinformatics/btr184. Epub 2011 Apr 9.

PMID:
21478487
[PubMed - indexed for MEDLINE]
Free Article
10.

Dissect: detection and characterization of novel structural alterations in transcribed sequences.

Yorukoglu D, Hach F, Swanson L, Collins CC, Birol I, Sahinalp SC.

Bioinformatics. 2012 Jun 15;28(12):i179-87. doi: 10.1093/bioinformatics/bts214.

PMID:
22689759
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Pegasus: a comprehensive annotation and prediction tool for detection of driver gene fusions in cancer.

Abate F, Zairis S, Ficarra E, Acquaviva A, Wiggins CH, Frattini V, Lasorella A, Iavarone A, Inghirami G, Rabadan R.

BMC Syst Biol. 2014 Sep 4;8(1):97. [Epub ahead of print]

PMID:
25183062
[PubMed - as supplied by publisher]
Free Article
12.

BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data.

Chen K, Wallis JW, Kandoth C, Kalicki-Veizer JM, Mungall KL, Mungall AJ, Jones SJ, Marra MA, Ley TJ, Mardis ER, Wilson RK, Weinstein JN, Ding L.

Bioinformatics. 2012 Jul 15;28(14):1923-4. doi: 10.1093/bioinformatics/bts272. Epub 2012 May 4.

PMID:
22563071
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Gene fusions associated with recurrent amplicons represent a class of passenger aberrations in breast cancer.

Kalyana-Sundaram S, Shankar S, Deroo S, Iyer MK, Palanisamy N, Chinnaiyan AM, Kumar-Sinha C.

Neoplasia. 2012 Aug;14(8):702-8.

PMID:
22952423
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Clinical applications of next-generation sequencing in colorectal cancers.

Kim TM, Lee SH, Chung YJ.

World J Gastroenterol. 2013 Oct 28;19(40):6784-93. doi: 10.3748/wjg.v19.i40.6784.

PMID:
24187453
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Structural analysis of the genome of breast cancer cell line ZR-75-30 identifies twelve expressed fusion genes.

Schulte I, Batty EM, Pole JC, Blood KA, Mo S, Cooke SL, Ng C, Howe KL, Chin SF, Brenton JD, Caldas C, Howarth KD, Edwards PA.

BMC Genomics. 2012 Dec 22;13:719. doi: 10.1186/1471-2164-13-719.

PMID:
23260012
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

FACTERA: a practical method for the discovery of genomic rearrangements at breakpoint resolution.

Newman AM, Bratman SV, Stehr H, Lee LJ, Liu CL, Diehn M, Alizadeh AA.

Bioinformatics. 2014 Aug 20. pii: btu549. [Epub ahead of print]

PMID:
25143292
[PubMed - as supplied by publisher]
17.

Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line.

Zhao Q, Caballero OL, Levy S, Stevenson BJ, Iseli C, de Souza SJ, Galante PA, Busam D, Leversha MA, Chadalavada K, Rogers YH, Venter JC, Simpson AJ, Strausberg RL.

Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1886-91. doi: 10.1073/pnas.0812945106. Epub 2009 Jan 30.

PMID:
19181860
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

The landscape of kinase fusions in cancer.

Stransky N, Cerami E, Schalm S, Kim JL, Lengauer C.

Nat Commun. 2014 Sep 10;5:4846. doi: 10.1038/ncomms5846.

PMID:
25204415
[PubMed - in process]
19.

A sequence-level map of chromosomal breakpoints in the MCF-7 breast cancer cell line yields insights into the evolution of a cancer genome.

Hampton OA, Den Hollander P, Miller CA, Delgado DA, Li J, Coarfa C, Harris RA, Richards S, Scherer SE, Muzny DM, Gibbs RA, Lee AV, Milosavljevic A.

Genome Res. 2009 Feb;19(2):167-77. doi: 10.1101/gr.080259.108. Epub 2008 Dec 3.

PMID:
19056696
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The discovery of common recurrent transmembrane protease serine 2 (TMPRSS2)-erythroblastosis virus E26 transforming sequence (ETS) gene fusions in prostate cancer: significance and clinical implications.

Shah RB, Chinnaiyan AM.

Adv Anat Pathol. 2009 May;16(3):145-53. doi: 10.1097/PAP.0b013e3181a12da7. Review.

PMID:
19395877
[PubMed - indexed for MEDLINE]

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk