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Results: 1 to 20 of 94

1.

PROmiRNA: a new miRNA promoter recognition method uncovers the complex regulation of intronic miRNAs.

Marsico A, Huska MR, Lasserre J, Hu H, Vucicevic D, Musahl A, Orom U, Vingron M.

Genome Biol. 2013 Aug 16;14(8):R84. doi: 10.1186/gb-2013-14-8-r84.

PMID:
23958307
[PubMed - in process]
Free PMC Article
2.

Structure and activity of putative intronic miRNA promoters.

Monteys AM, Spengler RM, Wan J, Tecedor L, Lennox KA, Xing Y, Davidson BL.

RNA. 2010 Mar;16(3):495-505. doi: 10.1261/rna.1731910. Epub 2010 Jan 14.

PMID:
20075166
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

MicroRNA transcription start site prediction with multi-objective feature selection.

Bhattacharyya M, Feuerbach L, Bhadra T, Lengauer T, Bandyopadhyay S.

Stat Appl Genet Mol Biol. 2012 Jan 6;11(1):Article 6. doi: 10.2202/1544-6115.1743.

PMID:
22499686
[PubMed - indexed for MEDLINE]
4.

Annotation of gene promoters by integrative data-mining of ChIP-seq Pol-II enrichment data.

Gupta R, Wikramasinghe P, Bhattacharyya A, Perez FA, Pal S, Davuluri RV.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S65. doi: 10.1186/1471-2105-11-S1-S65.

PMID:
20122241
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Expression patterns of intronic microRNAs in Caenorhabditis elegans.

Isik M, Korswagen HC, Berezikov E.

Silence. 2010 Feb 1;1(1):5. doi: 10.1186/1758-907X-1-5.

PMID:
20226079
[PubMed]
Free PMC Article
6.

Computational prediction of intronic microRNA targets using host gene expression reveals novel regulatory mechanisms.

Radfar MH, Wong W, Morris Q.

PLoS One. 2011;6(6):e19312. doi: 10.1371/journal.pone.0019312. Epub 2011 Jun 9.

PMID:
21694770
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Biogenesis of intronic miRNAs located in clusters by independent transcription and alternative splicing.

Ramalingam P, Palanichamy JK, Singh A, Das P, Bhagat M, Kassab MA, Sinha S, Chattopadhyay P.

RNA. 2014 Jan;20(1):76-87. doi: 10.1261/rna.041814.113. Epub 2013 Nov 13.

PMID:
24226766
[PubMed - indexed for MEDLINE]
8.

Genome-scale spatiotemporal analysis of Caenorhabditis elegans microRNA promoter activity.

Martinez NJ, Ow MC, Reece-Hoyes JS, Barrasa MI, Ambros VR, Walhout AJ.

Genome Res. 2008 Dec;18(12):2005-15. doi: 10.1101/gr.083055.108. Epub 2008 Nov 3.

PMID:
18981266
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Features of mammalian microRNA promoters emerge from polymerase II chromatin immunoprecipitation data.

Corcoran DL, Pandit KV, Gordon B, Bhattacharjee A, Kaminski N, Benos PV.

PLoS One. 2009;4(4):e5279. doi: 10.1371/journal.pone.0005279. Epub 2009 Apr 23.

PMID:
19390574
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

MicroRNA discovery by similarity search to a database of RNA-seq profiles.

Pundhir S, Gorodkin J.

Front Genet. 2013 Jul 11;4:133. doi: 10.3389/fgene.2013.00133. eCollection 2013.

PMID:
23874353
[PubMed]
Free PMC Article
11.

Isolation and identification of gene-specific microRNAs.

Lin SL, Chang DC, Ying SY.

Methods Mol Biol. 2013;936:271-8.

PMID:
23007515
[PubMed - indexed for MEDLINE]
12.

Genome-wide and species-wide in silico screening for intragenic MicroRNAs in human, mouse and chicken.

Godnic I, Zorc M, Jevsinek Skok D, Calin GA, Horvat S, Dovc P, Kovac M, Kunej T.

PLoS One. 2013 Jun 6;8(6):e65165. doi: 10.1371/journal.pone.0065165. Print 2013.

PMID:
23762306
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

MaturePred: efficient identification of microRNAs within novel plant pre-miRNAs.

Xuan P, Guo M, Huang Y, Li W, Huang Y.

PLoS One. 2011;6(11):e27422. doi: 10.1371/journal.pone.0027422. Epub 2011 Nov 16.

PMID:
22110646
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Isolation and identification of gene-specific microRNAs.

Lin SL, Chang DC, Ying SY.

Methods Mol Biol. 2006;342:313-20. Review.

PMID:
16957385
[PubMed - indexed for MEDLINE]
15.

Intronic microRNA: discovery and biological implications.

Li SC, Tang P, Lin WC.

DNA Cell Biol. 2007 Apr;26(4):195-207.

PMID:
17465886
[PubMed - indexed for MEDLINE]
16.

Current perspectives in intronic micro RNAs (miRNAs).

Ying SY, Lin SL.

J Biomed Sci. 2006 Jan;13(1):5-15. Epub 2005 Oct 14. Review.

PMID:
16228283
[PubMed - indexed for MEDLINE]
17.

dPORE-miRNA: polymorphic regulation of microRNA genes.

Schmeier S, Schaefer U, MacPherson CR, Bajic VB.

PLoS One. 2011 Feb 4;6(2):e16657. doi: 10.1371/journal.pone.0016657.

PMID:
21326606
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Consensus miRNA expression profiles derived from interplatform normalization of microarray data.

Bargaje R, Hariharan M, Scaria V, Pillai B.

RNA. 2010 Jan;16(1):16-25. doi: 10.1261/rna.1688110. Epub 2009 Nov 30.

PMID:
19948767
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

miRFam: an effective automatic miRNA classification method based on n-grams and a multiclass SVM.

Ding J, Zhou S, Guan J.

BMC Bioinformatics. 2011 May 28;12:216. doi: 10.1186/1471-2105-12-216.

PMID:
21619662
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Chromatin structure analyses identify miRNA promoters.

Ozsolak F, Poling LL, Wang Z, Liu H, Liu XS, Roeder RG, Zhang X, Song JS, Fisher DE.

Genes Dev. 2008 Nov 15;22(22):3172-83. doi: 10.1101/gad.1706508.

PMID:
19056895
[PubMed - indexed for MEDLINE]
Free PMC Article

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