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Results: 1 to 20 of 96

1.

VlincRNAs controlled by retroviral elements are a hallmark of pluripotency and cancer.

St Laurent G, Shtokalo D, Dong B, Tackett MR, Fan X, Lazorthes S, Nicolas E, Sang N, Triche TJ, McCaffrey TA, Xiao W, Kapranov P.

Genome Biol. 2013 Jul 22;14(7):R73. doi: 10.1186/gb-2013-14-7-r73.

PMID:
23876380
[PubMed - in process]
Free PMC Article
2.

Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs.

Hangauer MJ, Vaughn IW, McManus MT.

PLoS Genet. 2013 Jun;9(6):e1003569. doi: 10.1371/journal.pgen.1003569. Epub 2013 Jun 20.

PMID:
23818866
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

A transcriptional sketch of a primary human breast cancer by 454 deep sequencing.

Guffanti A, Iacono M, Pelucchi P, Kim N, Soldà G, Croft LJ, Taft RJ, Rizzi E, Askarian-Amiri M, Bonnal RJ, Callari M, Mignone F, Pesole G, Bertalot G, Bernardi LR, Albertini A, Lee C, Mattick JS, Zucchi I, De Bellis G.

BMC Genomics. 2009 Apr 20;10:163. doi: 10.1186/1471-2164-10-163.

PMID:
19379481
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Systematic study of human long intergenic non-coding RNAs and their impact on cancer.

Sun L, Luo H, Liao Q, Bu D, Zhao G, Liu C, Liu Y, Zhao Y.

Sci China Life Sci. 2013 Apr;56(4):324-34. doi: 10.1007/s11427-013-4460-x. Epub 2013 Mar 16.

PMID:
23504273
[PubMed - indexed for MEDLINE]
5.

Detailed characterization of the mouse embryonic stem cell transcriptome reveals novel genes and intergenic splicing associated with pluripotency.

Kunarso G, Wong KY, Stanton LW, Lipovich L.

BMC Genomics. 2008 Apr 9;9:155. doi: 10.1186/1471-2164-9-155.

PMID:
18400104
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Comprehensive characterization of 10,571 mouse large intergenic noncoding RNAs from whole transcriptome sequencing.

Luo H, Sun S, Li P, Bu D, Cao H, Zhao Y.

PLoS One. 2013 Aug 12;8(8):e70835. doi: 10.1371/journal.pone.0070835. eCollection 2013.

PMID:
23951020
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Potential roles of microRNAs in regulating long intergenic noncoding RNAs.

Juan L, Wang G, Radovich M, Schneider BP, Clare SE, Wang Y, Liu Y.

BMC Med Genomics. 2013;6 Suppl 1:S7. doi: 10.1186/1755-8794-6-S1-S7. Epub 2013 Jan 23.

PMID:
23369519
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Antisense transcription is pervasive but rarely conserved in enteric bacteria.

Raghavan R, Sloan DB, Ochman H.

MBio. 2012 Aug 7;3(4). pii: e00156-12. doi: 10.1128/mBio.00156-12. Print 2012.

PMID:
22872780
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Transposable elements reveal a stem cell-specific class of long noncoding RNAs.

Kelley D, Rinn J.

Genome Biol. 2012 Nov 26;13(11):R107. doi: 10.1186/gb-2012-13-11-r107.

PMID:
23181609
[PubMed - in process]
Free PMC Article
10.

The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA.

Kapranov P, St Laurent G, Raz T, Ozsolak F, Reynolds CP, Sorensen PH, Reaman G, Milos P, Arceci RJ, Thompson JF, Triche TJ.

BMC Biol. 2010 Dec 21;8:149. doi: 10.1186/1741-7007-8-149. Erratum in: BMC Biol. 2011;9:86.

PMID:
21176148
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer.

Tahira AC, Kubrusly MS, Faria MF, Dazzani B, Fonseca RS, Maracaja-Coutinho V, Verjovski-Almeida S, Machado MC, Reis EM.

Mol Cancer. 2011 Nov 13;10:141. doi: 10.1186/1476-4598-10-141.

PMID:
22078386
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Divergent transcription is associated with promoters of transcriptional regulators.

Lepoivre C, Belhocine M, Bergon A, Griffon A, Yammine M, Vanhille L, Zacarias-Cabeza J, Garibal MA, Koch F, Maqbool MA, Fenouil R, Loriod B, Holota H, Gut M, Gut I, Imbert J, Andrau JC, Puthier D, Spicuglia S.

BMC Genomics. 2013 Dec 23;14:914. doi: 10.1186/1471-2164-14-914.

PMID:
24365181
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance.

Fort A, Hashimoto K, Yamada D, Salimullah M, Keya CA, Saxena A, Bonetti A, Voineagu I, Bertin N, Kratz A, Noro Y, Wong CH, de Hoon M, Andersson R, Sandelin A, Suzuki H, Wei CL, Koseki H; FANTOM Consortium, Hasegawa Y, Forrest AR, Carninci P.

Nat Genet. 2014 Jun;46(6):558-66. doi: 10.1038/ng.2965. Epub 2014 Apr 28.

PMID:
24777452
[PubMed - indexed for MEDLINE]
14.

Elevated rate of fixation of endogenous retroviral elements in Haplorhini TRIM5 and TRIM22 genomic sequences: impact on transcriptional regulation.

Diehl WE, Johnson WE, Hunter E.

PLoS One. 2013;8(3):e58532. doi: 10.1371/journal.pone.0058532. Epub 2013 Mar 14.

PMID:
23516500
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Identification of large intergenic non-coding RNAs in bovine muscle using next-generation transcriptomic sequencing.

Billerey C, Boussaha M, Esquerré D, Rebours E, Djari A, Meersseman C, Klopp C, Gautheret D, Rocha D.

BMC Genomics. 2014 Jun 19;15:499. doi: 10.1186/1471-2164-15-499.

PMID:
24948191
[PubMed - in process]
Free PMC Article
16.

The Opitz syndrome gene Mid1 is transcribed from a human endogenous retroviral promoter.

Landry JR, Rouhi A, Medstrand P, Mager DL.

Mol Biol Evol. 2002 Nov;19(11):1934-42.

PMID:
12411602
[PubMed - indexed for MEDLINE]
Free Article
17.

A novel reannotation strategy for dissecting DNA methylation patterns of human long intergenic non-coding RNAs in cancers.

Zhi H, Ning S, Li X, Li Y, Wu W, Li X.

Nucleic Acids Res. 2014 Sep 1;42(13):8258-70. doi: 10.1093/nar/gku575. Epub 2014 Jul 10.

PMID:
25013169
[PubMed - in process]
Free PMC Article
18.

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.

Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL.

Genes Dev. 2011 Sep 15;25(18):1915-27. doi: 10.1101/gad.17446611. Epub 2011 Sep 2.

PMID:
21890647
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Systematically profiling and annotating long intergenic non-coding RNAs in human embryonic stem cell.

Tang X, Hou M, Ding Y, Li Z, Ren L, Gao G.

BMC Genomics. 2013;14 Suppl 5:S3. doi: 10.1186/1471-2164-14-S5-S3. Epub 2013 Oct 16.

PMID:
24564552
[PubMed - in process]
Free PMC Article
20.

Retroviral vector sequences may interact with some internal promoters and influence expression.

Wu X, Holschen J, Kennedy SC, Ponder KP.

Hum Gene Ther. 1996 Jan 20;7(2):159-71.

PMID:
8788167
[PubMed - indexed for MEDLINE]

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