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Results: 1 to 20 of 93

1.

The advantages of SMRT sequencing.

Roberts RJ, Carneiro MO, Schatz MC.

Genome Biol. 2013 Jul 3;14(7):405. doi: 10.1186/gb-2013-14-6-405.

PMID:
23822731
[PubMed - in process]
Free PMC Article
2.

High-accuracy de novo assembly and SNP detection of chloroplast genomes using a SMRT circular consensus sequencing strategy.

Li Q, Li Y, Song J, Xu H, Xu J, Zhu Y, Li X, Gao H, Dong L, Qian J, Sun C, Chen S.

New Phytol. 2014 Aug 8. doi: 10.1111/nph.12966. [Epub ahead of print]

PMID:
25103547
[PubMed - as supplied by publisher]
3.

Advantages of Single-Molecule Real-Time Sequencing in High-GC Content Genomes.

Shin SC, Ahn do H, Kim SJ, Lee H, Oh TJ, Lee JE, Park H.

PLoS One. 2013 Jul 23;8(7):e68824. doi: 10.1371/journal.pone.0068824. Print 2013.

PMID:
23894349
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

proovread: large-scale high-accuracy PacBio correction through iterative short read consensus.

Hackl T, Hedrich R, Schultz J, Förster F.

Bioinformatics. 2014 Jul 10. pii: btu392. [Epub ahead of print]

PMID:
25015988
[PubMed - as supplied by publisher]
5.

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data.

Chin CS, Alexander DH, Marks P, Klammer AA, Drake J, Heiner C, Clum A, Copeland A, Huddleston J, Eichler EE, Turner SW, Korlach J.

Nat Methods. 2013 Jun;10(6):563-9. doi: 10.1038/nmeth.2474. Epub 2013 May 5.

PMID:
23644548
[PubMed - indexed for MEDLINE]
6.

Comparison of sequence reads obtained from three next-generation sequencing platforms.

Suzuki S, Ono N, Furusawa C, Ying BW, Yomo T.

PLoS One. 2011;6(5):e19534. doi: 10.1371/journal.pone.0019534. Epub 2011 May 17.

PMID:
21611185
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

De novo sequencing of plant genomes using second-generation technologies.

Imelfort M, Edwards D.

Brief Bioinform. 2009 Nov;10(6):609-18. doi: 10.1093/bib/bbp039. Review.

PMID:
19933209
[PubMed - indexed for MEDLINE]
Free Article
8.

An efficient and scalable graph modeling approach for capturing information at different levels in next generation sequencing reads.

Warnke JD, Ali HH.

BMC Bioinformatics. 2013;14 Suppl 11:S7. doi: 10.1186/1471-2105-14-S11-S7. Epub 2013 Nov 4.

PMID:
24564333
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Pseudo-Sanger sequencing: massively parallel production of long and near error-free reads using NGS technology.

Ruan J, Jiang L, Chong Z, Gong Q, Li H, Li C, Tao Y, Zheng C, Zhai W, Turissini D, Cannon CH, Lu X, Wu CI.

BMC Genomics. 2013 Oct 17;14:711. doi: 10.1186/1471-2164-14-711.

PMID:
24134808
[PubMed - in process]
Free PMC Article
10.

The Genome Sequencer FLX System--longer reads, more applications, straight forward bioinformatics and more complete data sets.

Droege M, Hill B.

J Biotechnol. 2008 Aug 31;136(1-2):3-10. doi: 10.1016/j.jbiotec.2008.03.021. Epub 2008 Jun 21. Review.

PMID:
18616967
[PubMed - indexed for MEDLINE]
11.

Read length and repeat resolution: exploring prokaryote genomes using next-generation sequencing technologies.

Cahill MJ, Köser CU, Ross NE, Archer JA.

PLoS One. 2010 Jul 12;5(7):e11518. doi: 10.1371/journal.pone.0011518.

PMID:
20634954
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory.

Chaisson MJ, Tesler G.

BMC Bioinformatics. 2012 Sep 19;13:238. doi: 10.1186/1471-2105-13-238.

PMID:
22988817
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

A statistical method for the detection of variants from next-generation resequencing of DNA pools.

Bansal V.

Bioinformatics. 2010 Jun 15;26(12):i318-24. doi: 10.1093/bioinformatics/btq214.

PMID:
20529923
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Next generation sequencing and comparative analyses of Xenopus mitogenomes.

Lloyd RE, Foster PG, Guille M, Littlewood DT.

BMC Genomics. 2012 Sep 19;13:496. doi: 10.1186/1471-2164-13-496.

PMID:
22992290
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Efficient frequency-based de novo short-read clustering for error trimming in next-generation sequencing.

Qu W, Hashimoto S, Morishita S.

Genome Res. 2009 Jul;19(7):1309-15. doi: 10.1101/gr.089151.108. Epub 2009 May 13.

PMID:
19439514
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution.

Ge H, Liu K, Juan T, Fang F, Newman M, Hoeck W.

Bioinformatics. 2011 Jul 15;27(14):1922-8. doi: 10.1093/bioinformatics/btr310. Epub 2011 May 18.

PMID:
21593131
[PubMed - indexed for MEDLINE]
Free Article
17.

Mapping accuracy of short reads from massively parallel sequencing and the implications for quantitative expression profiling.

Palmieri N, Schlötterer C.

PLoS One. 2009 Jul 28;4(7):e6323. doi: 10.1371/journal.pone.0006323.

PMID:
19636379
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Accurate, rapid and high-throughput detection of strain-specific polymorphisms in Bacillus anthracis and Yersinia pestis by next-generation sequencing.

Cummings CA, Bormann Chung CA, Fang R, Barker M, Brzoska P, Williamson PC, Beaudry J, Matthews M, Schupp J, Wagner DM, Birdsell D, Vogler AJ, Furtado MR, Keim P, Budowle B.

Investig Genet. 2010 Sep 1;1(1):5. doi: 10.1186/2041-2223-1-5.

PMID:
21092340
[PubMed]
Free PMC Article
19.

WITHDRAWN: Evaluation of next-generation sequencing software in mapping and assembly.

Bao S, Jiang R, Kwan W, Wang B, Ma X, Song YQ.

J Hum Genet. 2011 Jun 16. doi: 10.1038/jhg.2011.62. Epub 2011 Jun 16. Retraction in: J Hum Genet. 2011 Sep;56(9):687.

PMID:
21677664
[PubMed]
20.

Separating metagenomic short reads into genomes via clustering.

Tanaseichuk O, Borneman J, Jiang T.

Algorithms Mol Biol. 2012 Sep 26;7(1):27. doi: 10.1186/1748-7188-7-27.

PMID:
23009059
[PubMed]
Free PMC Article

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