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Results: 1 to 20 of 97

1.

Transcriptome analysis of human tissues and cell lines reveals one dominant transcript per gene.

Gonzàlez-Porta M, Frankish A, Rung J, Harrow J, Brazma A.

Genome Biol. 2013 Jul 1;14(7):R70. doi: 10.1186/gb-2013-14-7-r70.

PMID:
23815980
[PubMed - in process]
Free PMC Article
2.

De novo reconstruction of the Toxoplasma gondii transcriptome improves on the current genome annotation and reveals alternatively spliced transcripts and putative long non-coding RNAs.

Hassan MA, Melo MB, Haas B, Jensen KD, Saeij JP.

BMC Genomics. 2012 Dec 12;13:696. doi: 10.1186/1471-2164-13-696.

PMID:
23231500
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Molecular phenotype of zebrafish ovarian follicle by serial analysis of gene expression and proteomic profiling, and comparison with the transcriptomes of other animals.

Knoll-Gellida A, André M, Gattegno T, Forgue J, Admon A, Babin PJ.

BMC Genomics. 2006 Mar 9;7:46.

PMID:
16526958
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Whole transcriptome sequencing of the aging rat brain reveals dynamic RNA changes in the dark matter of the genome.

Wood SH, Craig T, Li Y, Merry B, de Magalhães JP.

Age (Dordr). 2013 Jun;35(3):763-76. doi: 10.1007/s11357-012-9410-1. Epub 2012 May 4.

PMID:
22555619
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Knowledge-based reconstruction of mRNA transcripts with short sequencing reads for transcriptome research.

Seok J, Xu W, Jiang H, Davis RW, Xiao W.

PLoS One. 2012;7(2):e31440. doi: 10.1371/journal.pone.0031440. Epub 2012 Feb 1.

PMID:
22312447
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis.

Marquez Y, Brown JW, Simpson C, Barta A, Kalyna M.

Genome Res. 2012 Jun;22(6):1184-95. doi: 10.1101/gr.134106.111. Epub 2012 Mar 5.

PMID:
22391557
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote.

Liu S, Zhang Y, Zhou Z, Waldbieser G, Sun F, Lu J, Zhang J, Jiang Y, Zhang H, Wang X, Rajendran KV, Khoo L, Kucuktas H, Peatman E, Liu Z.

BMC Genomics. 2012 Nov 5;13:595. doi: 10.1186/1471-2164-13-595.

PMID:
23127152
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Computational discovery of human coding and non-coding transcripts with conserved splice sites.

Rose D, Hiller M, Schutt K, Hackermüller J, Backofen R, Stadler PF.

Bioinformatics. 2011 Jul 15;27(14):1894-900. doi: 10.1093/bioinformatics/btr314. Epub 2011 May 26.

PMID:
21622663
[PubMed - indexed for MEDLINE]
Free Article
9.

Transcriptomic and proteomic analyses of the Aspergillus fumigatus hypoxia response using an oxygen-controlled fermenter.

Barker BM, Kroll K, Vödisch M, Mazurie A, Kniemeyer O, Cramer RA.

BMC Genomics. 2012 Feb 6;13:62. doi: 10.1186/1471-2164-13-62.

PMID:
22309491
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Genome-wide identification of differentially expressed genes under water deficit stress in upland cotton (Gossypium hirsutum L.).

Park W, Scheffler BE, Bauer PJ, Campbell BT.

BMC Plant Biol. 2012 Jun 15;12:90. doi: 10.1186/1471-2229-12-90.

PMID:
22703539
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array.

Gardina PJ, Clark TA, Shimada B, Staples MK, Yang Q, Veitch J, Schweitzer A, Awad T, Sugnet C, Dee S, Davies C, Williams A, Turpaz Y.

BMC Genomics. 2006 Dec 27;7:325.

PMID:
17192196
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Heart transcriptome of the bank vole (Myodes glareolus): towards understanding the evolutionary variation in metabolic rate.

Babik W, Stuglik M, Qi W, Kuenzli M, Kuduk K, Koteja P, Radwan J.

BMC Genomics. 2010 Jun 21;11:390. doi: 10.1186/1471-2164-11-390.

PMID:
20565972
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

An improved canine genome and a comprehensive catalogue of coding genes and non-coding transcripts.

Hoeppner MP, Lundquist A, Pirun M, Meadows JR, Zamani N, Johnson J, Sundström G, Cook A, FitzGerald MG, Swofford R, Mauceli E, Moghadam BT, Greka A, Alföldi J, Abouelleil A, Aftuck L, Bessette D, Berlin A, Brown A, Gearin G, Lui A, Macdonald JP, Priest M, Shea T, Turner-Maier J, Zimmer A, Lander ES, di Palma F, Lindblad-Toh K, Grabherr MG.

PLoS One. 2014 Mar 13;9(3):e91172. doi: 10.1371/journal.pone.0091172. eCollection 2014.

PMID:
24625832
[PubMed - in process]
Free PMC Article
14.

Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).

Foffi G, Pastore A, Piazza F, Temussi PA.

Phys Biol. 2013 Aug 2;10(4):040301. [Epub ahead of print]

PMID:
23912807
[PubMed - as supplied by publisher]
15.

High resolution analysis of the human transcriptome: detection of extensive alternative splicing independent of transcriptional activity.

Zhou W, Calciano MA, Jordan H, Brenner M, Johnson S, Wu D, Lei L, Pallares D, Beurdeley P, Rouet F, Gill PS, Bracco L, Soucaille C, Einstein R.

BMC Genet. 2009 Oct 5;10:63. doi: 10.1186/1471-2156-10-63.

PMID:
19804644
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Development of an expressed gene catalogue and molecular markers from the de novo assembly of short sequence reads of the lentil (Lens culinaris Medik.) transcriptome.

Verma P, Shah N, Bhatia S.

Plant Biotechnol J. 2013 Sep;11(7):894-905. doi: 10.1111/pbi.12082. Epub 2013 Jun 13.

PMID:
23759076
[PubMed - indexed for MEDLINE]
17.

Analysis of transcript and protein overlap in a human osteosarcoma cell line.

Klevebring D, Fagerberg L, Lundberg E, Emanuelsson O, Uhlén M, Lundeberg J.

BMC Genomics. 2010 Dec 2;11:684. doi: 10.1186/1471-2164-11-684.

PMID:
21126332
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Modeling transcriptome based on transcript-sampling data.

Zhu J, He F, Wang J, Yu J.

PLoS One. 2008 Feb 20;3(2):e1659. doi: 10.1371/journal.pone.0001659.

PMID:
18286206
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Comparison of total and cytoplasmic mRNA reveals global regulation by nuclear retention and miRNAs.

Solnestam BW, Stranneheim H, Hällman J, Käller M, Lundberg E, Lundeberg J, Akan P.

BMC Genomics. 2012 Oct 30;13:574. doi: 10.1186/1471-2164-13-574.

PMID:
23110385
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Extensive transcriptional heterogeneity revealed by isoform profiling.

Pelechano V, Wei W, Steinmetz LM.

Nature. 2013 May 2;497(7447):127-31. doi: 10.1038/nature12121. Epub 2013 Apr 24.

PMID:
23615609
[PubMed - indexed for MEDLINE]
Free PMC Article

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