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Results: 1 to 20 of 96

1.

User guide for mapping-by-sequencing in Arabidopsis.

James GV, Patel V, Nordström KJ, Klasen JR, Salomé PA, Weigel D, Schneeberger K.

Genome Biol. 2013 Jun 17;14(6):R61. doi: 10.1186/gb-2013-14-6-r61.

PMID:
23773572
[PubMed - in process]
Free PMC Article
2.

Next-generation mapping of genetic mutations using bulk population sequencing.

Austin RS, Chatfield SP, Desveaux D, Guttman DS.

Methods Mol Biol. 2014;1062:301-15. doi: 10.1007/978-1-62703-580-4_17.

PMID:
24057374
[PubMed - indexed for MEDLINE]
3.

Facile mutant identification via a single parental backcross method and application of whole genome sequencing based mapping pipelines.

Allen RS, Nakasugi K, Doran RL, Millar AA, Waterhouse PM.

Front Plant Sci. 2013 Sep 13;4:362. doi: 10.3389/fpls.2013.00362. eCollection 2013.

PMID:
24062760
[PubMed]
Free PMC Article
4.

Identification of EMS-induced causal mutations in a non-reference Arabidopsis thaliana accession by whole genome sequencing.

Uchida N, Sakamoto T, Kurata T, Tasaka M.

Plant Cell Physiol. 2011 Apr;52(4):716-22. doi: 10.1093/pcp/pcr029. Epub 2011 Mar 11.

PMID:
21398646
[PubMed - indexed for MEDLINE]
5.

Deep sequencing strategies for mapping and identifying mutations from genetic screens.

Zuryn S, Jarriault S.

Worm. 2013 Jul 1;2(3):e25081. doi: 10.4161/worm.25081. Epub 2013 May 21. Review.

PMID:
24778934
[PubMed]
Free PMC Article
6.

Identification of an EMS-induced causal mutation in a gene required for boron-mediated root development by low-coverage genome re-sequencing in Arabidopsis.

Tabata R, Kamiya T, Shigenobu S, Yamaguchi K, Yamada M, Hasebe M, Fujiwara T, Sawa S.

Plant Signal Behav. 2013 Jan;8(1):e22534. doi: 10.4161/psb.22534. Epub 2012 Oct 26.

PMID:
23104114
[PubMed - in process]
Free PMC Article
7.

Identification of mutations in zebrafish using next-generation sequencing.

Henke K, Bowen ME, Harris MP.

Curr Protoc Mol Biol. 2013 Oct 11;104:Unit 7.13. doi: 10.1002/0471142727.mb0713s104.

PMID:
24510885
[PubMed - in process]
8.

Synteny-based mapping-by-sequencing enabled by targeted enrichment.

Galvão VC, Nordström KJ, Lanz C, Sulz P, Mathieu J, Posé D, Schmid M, Weigel D, Schneeberger K.

Plant J. 2012 Aug;71(3):517-26. doi: 10.1111/j.1365-313X.2012.04993.x. Epub 2012 May 14.

PMID:
22409706
[PubMed - indexed for MEDLINE]
9.

Usability study of clinical exome analysis software: Top lessons learned and recommendations.

Shyr C, Kushniruk A, Wasserman WW.

J Biomed Inform. 2014 May 24. pii: S1532-0464(14)00121-X. doi: 10.1016/j.jbi.2014.05.004. [Epub ahead of print]

PMID:
24860971
[PubMed - as supplied by publisher]
Free Article
10.

Whole Genome Sequencing and a New Bioinformatics Platform Allow for Rapid Gene Identification in D. melanogaster EMS Screens.

Gonzalez MA, Van Booven D, Hulme W, Ulloa RH, Lebrigio RF, Osterloh J, Logan M, Freeman M, Zuchner S.

Biology (Basel). 2012 Dec 5;1(3):766-77. doi: 10.3390/biology1030766.

PMID:
24832518
[PubMed]
Free PMC Article
11.

Comparing Computational Methods for Identification of Allele-Specific Expression based on Next Generation Sequencing Data.

Liu Z, Yang J, Xu H, Li C, Wang Z, Li Y, Dong X, Li Y.

Genet Epidemiol. 2014 Sep 2. doi: 10.1002/gepi.21846. [Epub ahead of print]

PMID:
25183311
[PubMed - as supplied by publisher]
12.

Perspectives for identification of mutations in the zebrafish: making use of next-generation sequencing technologies for forward genetic approaches.

Henke K, Bowen ME, Harris MP.

Methods. 2013 Aug 15;62(3):185-96. doi: 10.1016/j.ymeth.2013.05.015. Epub 2013 Jun 5. Review.

PMID:
23748111
[PubMed - indexed for MEDLINE]
13.

Next-generation mapping of Arabidopsis genes.

Austin RS, Vidaurre D, Stamatiou G, Breit R, Provart NJ, Bonetta D, Zhang J, Fung P, Gong Y, Wang PW, McCourt P, Guttman DS.

Plant J. 2011 Aug;67(4):715-25. doi: 10.1111/j.1365-313X.2011.04619.x. Epub 2011 Jul 18.

PMID:
21518053
[PubMed - indexed for MEDLINE]
14.

Old can be new again: HAPPY whole genome sequencing, mapping and assembly.

Jiang Z, Rokhsar DS, Harland RM.

Int J Biol Sci. 2009;5(4):298-303. Epub 2009 Apr 15. Review. Erratum in: Int J Biol Sci. 2009;5(6):621.

PMID:
19381348
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Comparison of mapping algorithms used in high-throughput sequencing: application to Ion Torrent data.

Caboche S, Audebert C, Lemoine Y, Hot D.

BMC Genomics. 2014 Apr 5;15:264. doi: 10.1186/1471-2164-15-264.

PMID:
24708189
[PubMed - in process]
Free PMC Article
16.

Identification of EMS-induced causal mutations in Arabidopsis thaliana by next-generation sequencing.

Uchida N, Sakamoto T, Tasaka M, Kurata T.

Methods Mol Biol. 2014;1062:259-70. doi: 10.1007/978-1-62703-580-4_14.

PMID:
24057371
[PubMed - indexed for MEDLINE]
17.

Mutation mapping and identification by whole-genome sequencing.

Leshchiner I, Alexa K, Kelsey P, Adzhubei I, Austin-Tse CA, Cooney JD, Anderson H, King MJ, Stottmann RW, Garnaas MK, Ha S, Drummond IA, Paw BH, North TE, Beier DR, Goessling W, Sunyaev SR.

Genome Res. 2012 Aug;22(8):1541-8. doi: 10.1101/gr.135541.111. Epub 2012 May 3.

PMID:
22555591
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Fast isogenic mapping-by-sequencing of ethyl methanesulfonate-induced mutant bulks.

Hartwig B, James GV, Konrad K, Schneeberger K, Turck F.

Plant Physiol. 2012 Oct;160(2):591-600. doi: 10.1104/pp.112.200311. Epub 2012 Jul 26.

PMID:
22837357
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Design of association studies with pooled or un-pooled next-generation sequencing data.

Kim SY, Li Y, Guo Y, Li R, Holmkvist J, Hansen T, Pedersen O, Wang J, Nielsen R.

Genet Epidemiol. 2010 Jul;34(5):479-91. doi: 10.1002/gepi.20501.

PMID:
20552648
[PubMed - indexed for MEDLINE]
20.

Gene for gene alignment between the Brassica and Arabidopsis genomes by direct transcriptome mapping.

Li G, Gao M, Yang B, Quiros CF.

Theor Appl Genet. 2003 Jun;107(1):168-80. Epub 2003 Mar 21.

PMID:
12835942
[PubMed - indexed for MEDLINE]

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