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Results: 1 to 20 of 98

1.

Conservation and divergence of transcriptomic and epigenomic variation in maize hybrids.

He G, Chen B, Wang X, Li X, Li J, He H, Yang M, Lu L, Qi Y, Wang X, Deng XW.

Genome Biol. 2013 Jun 12;14(6):R57. doi: 10.1186/gb-2013-14-6-r57.

PMID:
23758703
[PubMed - in process]
Free PMC Article
2.

Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids.

He G, Zhu X, Elling AA, Chen L, Wang X, Guo L, Liang M, He H, Zhang H, Chen F, Qi Y, Chen R, Deng XW.

Plant Cell. 2010 Jan;22(1):17-33. doi: 10.1105/tpc.109.072041. Epub 2010 Jan 19.

PMID:
20086188
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Allele-specific DNA methylation analyses associated with siRNAs in Arabidopsis hybrids.

Chen S, He H, Deng X.

Sci China Life Sci. 2014 May;57(5):519-25. doi: 10.1007/s11427-014-4629-y. Epub 2014 Apr 4.

PMID:
24699915
[PubMed - in process]
4.

Complementation contributes to transcriptome complexity in maize (Zea mays L.) hybrids relative to their inbred parents.

Paschold A, Jia Y, Marcon C, Lund S, Larson NB, Yeh CT, Ossowski S, Lanz C, Nettleton D, Schnable PS, Hochholdinger F.

Genome Res. 2012 Dec;22(12):2445-54. doi: 10.1101/gr.138461.112. Epub 2012 Oct 19.

PMID:
23086286
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Heterosis in early maize ear inflorescence development: a genome-wide transcription analysis for two maize inbred lines and their hybrid.

Ding H, Qin C, Luo X, Li L, Chen Z, Liu H, Gao J, Lin H, Shen Y, Zhao M, Lübberstedt T, Zhang Z, Pan G.

Int J Mol Sci. 2014 Aug 11;15(8):13892-915. doi: 10.3390/ijms150813892.

PMID:
25116687
[PubMed - in process]
Free PMC Article
6.

Rapid genomic alteration in an 'incompatible' pair of maize reciprocal F1 hybrids--a possible cause for the accumulation of inter-strain genetic diversity.

Zhao XX, Chai Y, Wang HY, Zhao N, Liu B.

Hereditas. 2010 Feb;147(1):1-9. doi: 10.1111/j.1601-5223.2009.02139.x.

PMID:
20416011
[PubMed - indexed for MEDLINE]
7.

Comparison of maize (Zea mays L.) F1-hybrid and parental inbred line primary root transcriptomes suggests organ-specific patterns of nonadditive gene expression and conserved expression trends.

Hoecker N, Keller B, Muthreich N, Chollet D, Descombes P, Piepho HP, Hochholdinger F.

Genetics. 2008 Jul;179(3):1275-83. doi: 10.1534/genetics.108.088278. Epub 2008 Jun 18.

PMID:
18562640
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Repeat associated small RNAs vary among parents and following hybridization in maize.

Barber WT, Zhang W, Win H, Varala KK, Dorweiler JE, Hudson ME, Moose SP.

Proc Natl Acad Sci U S A. 2012 Jun 26;109(26):10444-9. doi: 10.1073/pnas.1202073109. Epub 2012 Jun 11.

PMID:
22689990
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Tissue culture-induced genetic and epigenetic alterations in rice pure-lines, F1 hybrids and polyploids.

Wang X, Wu R, Lin X, Bai Y, Song C, Yu X, Xu C, Zhao N, Dong Y, Liu B.

BMC Plant Biol. 2013 May 5;13:77. doi: 10.1186/1471-2229-13-77.

PMID:
23642214
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Gene expression analyses in maize inbreds and hybrids with varying levels of heterosis.

Stupar RM, Gardiner JM, Oldre AG, Haun WJ, Chandler VL, Springer NM.

BMC Plant Biol. 2008 Apr 10;8:33. doi: 10.1186/1471-2229-8-33.

PMID:
18402703
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The epigenome and plant development.

He G, Elling AA, Deng XW.

Annu Rev Plant Biol. 2011;62:411-35. doi: 10.1146/annurev-arplant-042110-103806. Review.

PMID:
21438682
[PubMed - indexed for MEDLINE]
12.

High throughput RNA sequencing of a hybrid maize and its parents shows different mechanisms responsive to nitrogen limitation.

Bi YM, Meyer A, Downs GS, Shi X, El-Kereamy A, Lukens L, Rothstein SJ.

BMC Genomics. 2014 Jan 28;15:77. doi: 10.1186/1471-2164-15-77.

PMID:
24472600
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Changes in 24-nt siRNA levels in Arabidopsis hybrids suggest an epigenetic contribution to hybrid vigor.

Groszmann M, Greaves IK, Albertyn ZI, Scofield GN, Peacock WJ, Dennis ES.

Proc Natl Acad Sci U S A. 2011 Feb 8;108(6):2617-22. doi: 10.1073/pnas.1019217108. Epub 2011 Jan 25.

PMID:
21266545
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Genome-wide analysis of DNA methylation and gene expression changes in two Arabidopsis ecotypes and their reciprocal hybrids.

Shen H, He H, Li J, Chen W, Wang X, Guo L, Peng Z, He G, Zhong S, Qi Y, Terzaghi W, Deng XW.

Plant Cell. 2012 Mar;24(3):875-92. doi: 10.1105/tpc.111.094870. Epub 2012 Mar 20.

PMID:
22438023
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Additive inheritance of histone modifications in Arabidopsis thaliana intra-specific hybrids.

Moghaddam AM, Roudier F, Seifert M, Bérard C, Magniette ML, Ashtiyani RK, Houben A, Colot V, Mette MF.

Plant J. 2011 Aug;67(4):691-700. doi: 10.1111/j.1365-313X.2011.04628.x. Epub 2011 Jul 11.

PMID:
21554454
[PubMed - indexed for MEDLINE]
16.

Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes.

Reinders J, Wulff BB, Mirouze M, Marí-Ordóñez A, Dapp M, Rozhon W, Bucher E, Theiler G, Paszkowski J.

Genes Dev. 2009 Apr 15;23(8):939-50. doi: 10.1101/gad.524609.

PMID:
19390088
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Genome-wide high resolution parental-specific DNA and histone methylation maps uncover patterns of imprinting regulation in maize.

Zhang M, Xie S, Dong X, Zhao X, Zeng B, Chen J, Li H, Yang W, Zhao H, Wang G, Chen Z, Sun S, Hauck A, Jin W, Lai J.

Genome Res. 2014 Jan;24(1):167-76. doi: 10.1101/gr.155879.113. Epub 2013 Oct 16.

PMID:
24131563
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Heritable epigenetic variation among maize inbreds.

Eichten SR, Swanson-Wagner RA, Schnable JC, Waters AJ, Hermanson PJ, Liu S, Yeh CT, Jia Y, Gendler K, Freeling M, Schnable PS, Vaughn MW, Springer NM.

PLoS Genet. 2011 Nov;7(11):e1002372. doi: 10.1371/journal.pgen.1002372. Epub 2011 Nov 17.

PMID:
22125494
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Specific changes in total and mitochondrial proteomes are associated with higher levels of heterosis in maize hybrids.

Dahal D, Mooney BP, Newton KJ.

Plant J. 2012 Oct;72(1):70-83. doi: 10.1111/j.1365-313X.2012.05056.x. Epub 2012 Jul 5.

PMID:
22607058
[PubMed - indexed for MEDLINE]
20.

Transposable elements, a treasure trove to decipher epigenetic variation: insights from Arabidopsis and crop epigenomes.

Mirouze M, Vitte C.

J Exp Bot. 2014 Jun;65(10):2801-12. doi: 10.1093/jxb/eru120. Epub 2014 Apr 17.

PMID:
24744427
[PubMed - in process]

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