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Results: 1 to 20 of 98

1.

The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.

Motamayor JC, Mockaitis K, Schmutz J, Haiminen N, Livingstone D 3rd, Cornejo O, Findley SD, Zheng P, Utro F, Royaert S, Saski C, Jenkins J, Podicheti R, Zhao M, Scheffler BE, Stack JC, Feltus FA, Mustiga GM, Amores F, Phillips W, Marelli JP, May GD, Shapiro H, Ma J, Bustamante CD, Schnell RJ, Main D, Gilbert D, Parida L, Kuhn DN.

Genome Biol. 2013 Jun 3;14(6):r53. doi: 10.1186/gb-2013-14-6-r53.

PMID:
23731509
[PubMed - in process]
Free PMC Article
2.

A genetically anchored physical framework for Theobroma cacao cv. Matina 1-6.

Saski CA, Feltus FA, Staton ME, Blackmon BP, Ficklin SP, Kuhn DN, Schnell RJ, Shapiro H, Motamayor JC.

BMC Genomics. 2011 Aug 16;12:413. doi: 10.1186/1471-2164-12-413.

PMID:
21846342
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Sequencing of a QTL-rich region of the Theobroma cacao genome using pooled BACs and the identification of trait specific candidate genes.

Feltus FA, Saski CA, Mockaitis K, Haiminen N, Parida L, Smith Z, Ford J, Staton ME, Ficklin SP, Blackmon BP, Cheng CH, Schnell RJ, Kuhn DN, Motamayor JC.

BMC Genomics. 2011 Jul 27;12:379. doi: 10.1186/1471-2164-12-379.

PMID:
21794110
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The genome of Theobroma cacao.

Argout X, Salse J, Aury JM, Guiltinan MJ, Droc G, Gouzy J, Allegre M, Chaparro C, Legavre T, Maximova SN, Abrouk M, Murat F, Fouet O, Poulain J, Ruiz M, Roguet Y, Rodier-Goud M, Barbosa-Neto JF, Sabot F, Kudrna D, Ammiraju JS, Schuster SC, Carlson JE, Sallet E, Schiex T, Dievart A, Kramer M, Gelley L, Shi Z, Bérard A, Viot C, Boccara M, Risterucci AM, Guignon V, Sabau X, Axtell MJ, Ma Z, Zhang Y, Brown S, Bourge M, Golser W, Song X, Clement D, Rivallan R, Tahi M, Akaza JM, Pitollat B, Gramacho K, D'Hont A, Brunel D, Infante D, Kebe I, Costet P, Wing R, McCombie WR, Guiderdoni E, Quetier F, Panaud O, Wincker P, Bocs S, Lanaud C.

Nat Genet. 2011 Feb;43(2):101-8. doi: 10.1038/ng.736. Epub 2010 Dec 26.

PMID:
21186351
[PubMed - indexed for MEDLINE]
5.

Transposon fingerprinting using low coverage whole genome shotgun sequencing in cacao (Theobroma cacao L.) and related species.

Sveinsson S, Gill N, Kane NC, Cronk Q.

BMC Genomics. 2013 Jul 24;14:502. doi: 10.1186/1471-2164-14-502.

PMID:
23883295
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Cacao domestication II: progenitor germplasm of the Trinitario cacao cultivar.

Motamayor JC, Risterucci AM, Heath M, Lanaud C.

Heredity (Edinb). 2003 Sep;91(3):322-30.

PMID:
12939635
[PubMed - indexed for MEDLINE]
Free Article
7.

The mitochondrial genome of Moniliophthora roreri, the frosty pod rot pathogen of cacao.

Costa GG, Cabrera OG, Tiburcio RA, Medrano FJ, Carazzolle MF, Thomazella DP, Schuster SC, Carlson JE, Guiltinan MJ, Bailey BA, Mieczkowski P, Pereira GA, Meinhardt LW.

Fungal Biol. 2012 May;116(5):551-62. doi: 10.1016/j.funbio.2012.01.008. Epub 2012 Feb 15.

PMID:
22559916
[PubMed - indexed for MEDLINE]
9.

Fine mapping of the pleiotropic locus B for black spine and orange mature fruit color in cucumber identifies a 50 kb region containing a R2R3-MYB transcription factor.

Li Y, Wen C, Weng Y.

Theor Appl Genet. 2013 Aug;126(8):2187-96. doi: 10.1007/s00122-013-2128-3. Epub 2013 May 21.

PMID:
23689749
[PubMed - indexed for MEDLINE]
10.

Cacao domestication I: the origin of the cacao cultivated by the Mayas.

Motamayor JC, Risterucci AM, Lopez PA, Ortiz CF, Moreno A, Lanaud C.

Heredity (Edinb). 2002 Nov;89(5):380-6.

PMID:
12399997
[PubMed - indexed for MEDLINE]
Free Article
11.

Gene discovery and microarray analysis of cacao (Theobroma cacao L.) varieties.

Jones PG, Allaway D, Gilmour DM, Harris C, Rankin D, Retzel ER, Jones CA.

Planta. 2002 Dec;216(2):255-64. Epub 2002 Oct 30.

PMID:
12447539
[PubMed - indexed for MEDLINE]
12.

Towards the understanding of the cocoa transcriptome: Production and analysis of an exhaustive dataset of ESTs of Theobroma cacao L. generated from various tissues and under various conditions.

Argout X, Fouet O, Wincker P, Gramacho K, Legavre T, Sabau X, Risterucci AM, Da Silva C, Cascardo J, Allegre M, Kuhn D, Verica J, Courtois B, Loor G, Babin R, Sounigo O, Ducamp M, Guiltinan MJ, Ruiz M, Alemanno L, Machado R, Phillips W, Schnell R, Gilmour M, Rosenquist E, Butler D, Maximova S, Lanaud C.

BMC Genomics. 2008 Oct 30;9:512. doi: 10.1186/1471-2164-9-512.

PMID:
18973681
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genome and secretome analysis of the hemibiotrophic fungal pathogen, Moniliophthora roreri, which causes frosty pod rot disease of cacao: mechanisms of the biotrophic and necrotrophic phases.

Meinhardt LW, Costa GG, Thomazella DP, Teixeira PJ, Carazzolle MF, Schuster SC, Carlson JE, Guiltinan MJ, Mieczkowski P, Farmer A, Ramaraj T, Crozier J, Davis RE, Shao J, Melnick RL, Pereira GA, Bailey BA.

BMC Genomics. 2014 Feb 27;15:164. doi: 10.1186/1471-2164-15-164.

PMID:
24571091
[PubMed - in process]
Free PMC Article
14.

Creation of BAC genomic resources for cocoa ( Theobroma cacao L.) for physical mapping of RGA containing BAC clones.

Clément D, Lanaud C, Sabau X, Fouet O, Le Cunff L, Ruiz E, Risterucci AM, Glaszmann JC, Piffanelli P.

Theor Appl Genet. 2004 May;108(8):1627-34. Epub 2004 Mar 16.

PMID:
15235775
[PubMed - indexed for MEDLINE]
15.

Discovery and mapping of a new expressed sequence tag-single nucleotide polymorphism and simple sequence repeat panel for large-scale genetic studies and breeding of Theobroma cacao L.

Allegre M, Argout X, Boccara M, Fouet O, Roguet Y, Bérard A, Thévenin JM, Chauveau A, Rivallan R, Clement D, Courtois B, Gramacho K, Boland-Augé A, Tahi M, Umaharan P, Brunel D, Lanaud C.

DNA Res. 2012;19(1):23-35. doi: 10.1093/dnares/dsr039. Epub 2011 Dec 30.

PMID:
22210604
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Establishing references for gene expression analyses by RT-qPCR in Theobroma cacao tissues.

Pinheiro TT, Litholdo CG Jr, Sereno ML, Leal GA Jr, Albuquerque PS, Figueira A.

Genet Mol Res. 2011 Nov 17;10(4):3291-305. doi: 10.4238/2011.November.17.4.

PMID:
22095481
[PubMed - indexed for MEDLINE]
Free Article
17.

Functional analysis of the Theobroma cacao NPR1 gene in Arabidopsis.

Shi Z, Maximova SN, Liu Y, Verica J, Guiltinan MJ.

BMC Plant Biol. 2010 Nov 15;10:248. doi: 10.1186/1471-2229-10-248.

PMID:
21078185
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Mapping quantitative trait loci for bean traits and ovule number in Theobroma cacao L.

Clement D, Risterucci AM, Motamayor JC, N'Goran J, Lanaud C.

Genome. 2003 Feb;46(1):103-11.

PMID:
12669802
[PubMed - indexed for MEDLINE]
19.
20.

Mapping QTL for yield components, vigor, and resistance to Phytophthora palmivora in Theobroma cacao L.

Clement D, Risterucci AM, Motamayor JC, N'Goran J, Lanaud C.

Genome. 2003 Apr;46(2):204-12.

PMID:
12723036
[PubMed - indexed for MEDLINE]

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