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Results: 1 to 20 of 98

1.

Machine learning and genome annotation: a match meant to be?

Yip KY, Cheng C, Gerstein M.

Genome Biol. 2013 May 29;14(5):205. doi: 10.1186/gb-2013-14-5-205.

PMID:
23731483
[PubMed - in process]
Free PMC Article
2.

Improving the Caenorhabditis elegans genome annotation using machine learning.

Rätsch G, Sonnenburg S, Srinivasan J, Witte H, Müller KR, Sommer RJ, Schölkopf B.

PLoS Comput Biol. 2007 Feb 23;3(2):e20. Epub 2006 Dec 21.

PMID:
17319737
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Beyond the 'best' match: machine learning annotation of protein sequences by integration of different sources of information.

Tetko IV, Rodchenkov IV, Walter MC, Rattei T, Mewes HW.

Bioinformatics. 2008 Mar 1;24(5):621-8. doi: 10.1093/bioinformatics/btm633. Epub 2008 Jan 3.

PMID:
18174184
[PubMed - indexed for MEDLINE]
Free Article
4.

Structural and functional-annotation of an equine whole genome oligoarray.

Bright LA, Burgess SC, Chowdhary B, Swiderski CE, McCarthy FM.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S8. doi: 10.1186/1471-2105-10-S11-S8.

PMID:
19811692
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

GPAT: retrieval of genomic annotation from large genomic position datasets.

Krebs A, Frontini M, Tora L.

BMC Bioinformatics. 2008 Dec 15;9:533. doi: 10.1186/1471-2105-9-533.

PMID:
19077303
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Game-powered machine learning.

Barrington L, Turnbull D, Lanckriet G.

Proc Natl Acad Sci U S A. 2012 Apr 24;109(17):6411-6. doi: 10.1073/pnas.1014748109. Epub 2012 Mar 28. Erratum in: Proc Natl Acad Sci U S A. 2012 May 29;109(22):8786.

PMID:
22460786
[PubMed]
Free PMC Article
7.

Integrative annotation of chromatin elements from ENCODE data.

Hoffman MM, Ernst J, Wilder SP, Kundaje A, Harris RS, Libbrecht M, Giardine B, Ellenbogen PM, Bilmes JA, Birney E, Hardison RC, Dunham I, Kellis M, Noble WS.

Nucleic Acids Res. 2013 Jan;41(2):827-41. doi: 10.1093/nar/gks1284. Epub 2012 Dec 5.

PMID:
23221638
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A machine learning approach for genome-wide prediction of morbid and druggable human genes based on systems-level data.

Costa PR, Acencio ML, Lemke N.

BMC Genomics. 2010 Dec 22;11 Suppl 5:S9. doi: 10.1186/1471-2164-11-S5-S9.

PMID:
21210975
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Drosophila gene expression pattern annotation through multi-instance multi-label learning.

Li YX, Ji S, Kumar S, Ye J, Zhou ZH.

IEEE/ACM Trans Comput Biol Bioinform. 2012 Jan-Feb;9(1):98-112. doi: 10.1109/TCBB.2011.73. Epub 2011 Apr 15.

PMID:
21519115
[PubMed - indexed for MEDLINE]
10.

Proteogenomics for environmental microbiology.

Armengaud J, Hartmann EM, Bland C.

Proteomics. 2013 Oct;13(18-19):2731-42. doi: 10.1002/pmic.201200576. Epub 2013 Jun 18. Review.

PMID:
23636904
[PubMed - indexed for MEDLINE]
11.

Machine learning for neuroimaging with scikit-learn.

Abraham A, Pedregosa F, Eickenberg M, Gervais P, Mueller A, Kossaifi J, Gramfort A, Thirion B, Varoquaux G.

Front Neuroinform. 2014 Feb 21;8:14. doi: 10.3389/fninf.2014.00014. eCollection 2014.

PMID:
24600388
[PubMed]
Free PMC Article
12.

Drosophila Gene Expression Pattern Annotation through Multi-Instance Multi-Label Learning.

Li YX, Ji S, Kumar S, Ye J, Zhou ZH.

IJCAI (U S). 2009 Jan 1;2009:1445-1450.

PMID:
20824158
[PubMed]
Free PMC Article
13.

Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach.

Andorf C, Dobbs D, Honavar V.

BMC Bioinformatics. 2007 Aug 3;8:284.

PMID:
17683567
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Fast and accurate semantic annotation of bioassays exploiting a hybrid of machine learning and user confirmation.

Clark AM, Bunin BA, Litterman NK, Schürer SC, Visser U.

PeerJ. 2014 Aug 14;2:e524. doi: 10.7717/peerj.524. eCollection 2014.

PMID:
25165633
[PubMed]
Free PMC Article
15.

The use of semantic similarity measures for optimally integrating heterogeneous Gene Ontology data from large scale annotation pipelines.

Mazandu GK, Mulder NJ.

Front Genet. 2014 Aug 6;5:264. doi: 10.3389/fgene.2014.00264. eCollection 2014.

PMID:
25147557
[PubMed]
Free PMC Article
16.

A Protein Classification Benchmark collection for machine learning.

Sonego P, Pacurar M, Dhir S, Kertész-Farkas A, Kocsor A, Gáspári Z, Leunissen JA, Pongor S.

Nucleic Acids Res. 2007 Jan;35(Database issue):D232-6. Epub 2006 Nov 16.

PMID:
17142240
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Applications of machine learning in cancer prediction and prognosis.

Cruz JA, Wishart DS.

Cancer Inform. 2007 Feb 11;2:59-77.

PMID:
19458758
[PubMed]
Free PMC Article
18.

Applications of machine learning and high-dimensional visualization in cancer detection, diagnosis, and management.

McCarthy JF, Marx KA, Hoffman PE, Gee AG, O'Neil P, Ujwal ML, Hotchkiss J.

Ann N Y Acad Sci. 2004 May;1020:239-62. Review.

PMID:
15208196
[PubMed - indexed for MEDLINE]
19.

SubCellProt: predicting protein subcellular localization using machine learning approaches.

Garg P, Sharma V, Chaudhari P, Roy N.

In Silico Biol. 2009;9(1-2):35-44.

PMID:
19537160
[PubMed - indexed for MEDLINE]
20.

Facilitating functional annotation of chicken microarray data.

Buza TJ, Kumar R, Gresham CR, Burgess SC, McCarthy FM.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S2. doi: 10.1186/1471-2105-10-S11-S2.

PMID:
19811685
[PubMed - indexed for MEDLINE]
Free PMC Article

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