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Results: 1 to 20 of 97

1.

Integrated analysis of recurrent properties of cancer genes to identify novel drivers.

D'Antonio M, Ciccarelli FD.

Genome Biol. 2013 May 29;14(5):R52. doi: 10.1186/gb-2013-14-5-r52.

PMID:
23718799
[PubMed - in process]
Free PMC Article
2.

Functional impact bias reveals cancer drivers.

Gonzalez-Perez A, Lopez-Bigas N.

Nucleic Acids Res. 2012 Nov;40(21):e169. doi: 10.1093/nar/gks743. Epub 2012 Aug 16.

PMID:
22904074
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Error occurred: cannot get document summary

PMID:
25236784

4.

Cancer core modules identification through genomic and transcriptomic changes correlation detection at network level.

Li W, Wang R, Bai L, Yan Z, Sun Z.

BMC Syst Biol. 2012 Jun 12;6:64. doi: 10.1186/1752-0509-6-64.

PMID:
22691569
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

VarWalker: personalized mutation network analysis of putative cancer genes from next-generation sequencing data.

Jia P, Zhao Z.

PLoS Comput Biol. 2014 Feb 6;10(2):e1003460. doi: 10.1371/journal.pcbi.1003460. eCollection 2014 Feb.

PMID:
24516372
[PubMed - in process]
Free PMC Article
6.

De novo discovery of mutated driver pathways in cancer.

Vandin F, Upfal E, Raphael BJ.

Genome Res. 2012 Feb;22(2):375-85. doi: 10.1101/gr.120477.111. Epub 2011 Jun 7.

PMID:
21653252
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

e-Driver: a novel method to identify protein regions driving cancer.

Porta-Pardo E, Godzik A.

Bioinformatics. 2014 Jul 26. pii: btu499. [Epub ahead of print]

PMID:
25064568
[PubMed - as supplied by publisher]
8.

Domain landscapes of somatic mutations in cancer.

Nehrt NL, Peterson TA, Park D, Kann MG.

BMC Genomics. 2012 Jun 18;13 Suppl 4:S9. doi: 10.1186/1471-2164-13-S4-S9.

PMID:
22759657
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Discovery of mutated subnetworks associated with clinical data in cancer.

Vandin F, Clay P, Upfal E, Raphael BJ.

Pac Symp Biocomput. 2012:55-66.

PMID:
22174262
[PubMed - indexed for MEDLINE]
Free Article
10.

Inferring causal genomic alterations in breast cancer using gene expression data.

Tran LM, Zhang B, Zhang Z, Zhang C, Xie T, Lamb JR, Dai H, Schadt EE, Zhu J.

BMC Syst Biol. 2011 Aug 1;5:121. doi: 10.1186/1752-0509-5-121.

PMID:
21806811
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Identification of mutated core cancer modules by integrating somatic mutation, copy number variation, and gene expression data.

Zhang J, Zhang S, Wang Y, Zhang XS.

BMC Syst Biol. 2013;7 Suppl 2:S4. doi: 10.1186/1752-0509-7-S2-S4. Epub 2013 Oct 14.

PMID:
24565034
[PubMed - in process]
Free PMC Article
12.

The mutational landscape of phosphorylation signaling in cancer.

Reimand J, Wagih O, Bader GD.

Sci Rep. 2013 Oct 2;3:2651. doi: 10.1038/srep02651.

PMID:
24089029
[PubMed - in process]
Free PMC Article
13.

Identification of rare cancer driver mutations by network reconstruction.

Torkamani A, Schork NJ.

Genome Res. 2009 Sep;19(9):1570-8. doi: 10.1101/gr.092833.109. Epub 2009 Jul 2.

PMID:
19574499
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Prediction of cancer driver mutations in protein kinases.

Torkamani A, Schork NJ.

Cancer Res. 2008 Mar 15;68(6):1675-82. doi: 10.1158/0008-5472.CAN-07-5283.

PMID:
18339846
[PubMed - indexed for MEDLINE]
Free Article
15.

Finding driver pathways in cancer: models and algorithms.

Vandin F, Upfal E, Raphael BJ.

Algorithms Mol Biol. 2012 Sep 6;7(1):23. doi: 10.1186/1748-7188-7-23.

PMID:
22954134
[PubMed]
Free PMC Article
16.

The mutational landscape of chromatin regulatory factors across 4,623 tumor samples.

Gonzalez-Perez A, Jene-Sanz A, Lopez-Bigas N.

Genome Biol. 2013;14(9):r106.

PMID:
24063517
[PubMed - in process]
Free PMC Article
17.

Comprehensive identification of mutational cancer driver genes across 12 tumor types.

Tamborero D, Gonzalez-Perez A, Perez-Llamas C, Deu-Pons J, Kandoth C, Reimand J, Lawrence MS, Getz G, Bader GD, Ding L, Lopez-Bigas N.

Sci Rep. 2013 Oct 2;3:2650. doi: 10.1038/srep02650.

PMID:
24084849
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Analysis and comparison of somatic mutations in paired primary and recurrent epithelial ovarian cancer samples.

Kim YM, Lee SW, Chun SM, Kim DY, Kim JH, Kim KR, Kim YT, Nam JH, van Hummelen P, MacConaill LE, Hahn WC, Jang SJ.

PLoS One. 2014 Jun 17;9(6):e99451. doi: 10.1371/journal.pone.0099451. eCollection 2014.

PMID:
24936796
[PubMed - in process]
Free PMC Article
19.

Identification of druggable cancer driver genes amplified across TCGA datasets.

Chen Y, McGee J, Chen X, Doman TN, Gong X, Zhang Y, Hamm N, Ma X, Higgs RE, Bhagwat SV, Buchanan S, Peng SB, Staschke KA, Yadav V, Yue Y, Kouros-Mehr H.

PLoS One. 2014 May 29;9(5):e98293. doi: 10.1371/journal.pone.0098293. eCollection 2014.

PMID:
24874471
[PubMed - in process]
Free PMC Article
20.

Simultaneous identification of multiple driver pathways in cancer.

Leiserson MD, Blokh D, Sharan R, Raphael BJ.

PLoS Comput Biol. 2013;9(5):e1003054. doi: 10.1371/journal.pcbi.1003054. Epub 2013 May 23.

PMID:
23717195
[PubMed - indexed for MEDLINE]
Free PMC Article

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