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Results: 1 to 20 of 95

1.

DNA methylation dynamics during intestinal stem cell differentiation reveals enhancers driving gene expression in the villus.

Kaaij LT, van de Wetering M, Fang F, Decato B, Molaro A, van de Werken HJ, van Es JH, Schuijers J, de Wit E, de Laat W, Hannon GJ, Clevers HC, Smith AD, Ketting RF.

Genome Biol. 2013 May 28;14(5):R50. doi: 10.1186/gb-2013-14-5-r50.

PMID:
23714178
[PubMed - in process]
Free PMC Article
2.

Genome-wide DNA methylation profiles in hematopoietic stem and progenitor cells reveal overrepresentation of ETS transcription factor binding sites.

Hogart A, Lichtenberg J, Ajay SS, Anderson S; NIH Intramural Sequencing Center, Margulies EH, Bodine DM.

Genome Res. 2012 Aug;22(8):1407-18. doi: 10.1101/gr.132878.111. Epub 2012 Jun 8.

PMID:
22684279
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

DNA methylation is required for the control of stem cell differentiation in the small intestine.

Sheaffer KL, Kim R, Aoki R, Elliott EN, Schug J, Burger L, Schübeler D, Kaestner KH.

Genes Dev. 2014 Mar 15;28(6):652-64. doi: 10.1101/gad.230318.113.

PMID:
24637118
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Human DNA methylomes at base resolution show widespread epigenomic differences.

Lister R, Pelizzola M, Dowen RH, Hawkins RD, Hon G, Tonti-Filippini J, Nery JR, Lee L, Ye Z, Ngo QM, Edsall L, Antosiewicz-Bourget J, Stewart R, Ruotti V, Millar AH, Thomson JA, Ren B, Ecker JR.

Nature. 2009 Nov 19;462(7271):315-22. doi: 10.1038/nature08514. Epub 2009 Oct 14.

PMID:
19829295
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

DNA methylation profile dynamics of tissue-dependent and differentially methylated regions during mouse brain development.

Hirabayashi K, Shiota K, Yagi S.

BMC Genomics. 2013 Feb 6;14:82. doi: 10.1186/1471-2164-14-82.

PMID:
23387509
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Charting a dynamic DNA methylation landscape of the human genome.

Ziller MJ, Gu H, Müller F, Donaghey J, Tsai LT, Kohlbacher O, De Jager PL, Rosen ED, Bennett DA, Bernstein BE, Gnirke A, Meissner A.

Nature. 2013 Aug 22;500(7463):477-81. doi: 10.1038/nature12433. Epub 2013 Aug 7.

PMID:
23925113
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Defining hypo-methylated regions of stem cell-specific promoters in human iPS cells derived from extra-embryonic amnions and lung fibroblasts.

Nishino K, Toyoda M, Yamazaki-Inoue M, Makino H, Fukawatase Y, Chikazawa E, Takahashi Y, Miyagawa Y, Okita H, Kiyokawa N, Akutsu H, Umezawa A.

PLoS One. 2010 Sep 27;5(9):e13017. doi: 10.1371/journal.pone.0013017.

PMID:
20885964
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Genome-wide profiling of bone reveals differentially methylated regions in osteoporosis and osteoarthritis.

Delgado-Calle J, Fernández AF, Sainz J, Zarrabeitia MT, Sañudo C, García-Renedo R, Pérez-Núñez MI, García-Ibarbia C, Fraga MF, Riancho JA.

Arthritis Rheum. 2013 Jan;65(1):197-205. doi: 10.1002/art.37753.

PMID:
23124911
[PubMed - indexed for MEDLINE]
Free Article
9.

DNA methylation dynamics during in vivo differentiation of blood and skin stem cells.

Bock C, Beerman I, Lien WH, Smith ZD, Gu H, Boyle P, Gnirke A, Fuchs E, Rossi DJ, Meissner A.

Mol Cell. 2012 Aug 24;47(4):633-47. doi: 10.1016/j.molcel.2012.06.019. Epub 2012 Jul 26.

PMID:
22841485
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Disclosing the crosstalk among DNA methylation, transcription factors, and histone marks in human pluripotent cells through discovery of DNA methylation motifs.

Luu PL, Schöler HR, Araúzo-Bravo MJ.

Genome Res. 2013 Dec;23(12):2013-29. doi: 10.1101/gr.155960.113. Epub 2013 Oct 22.

PMID:
24149073
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genome-wide screen for differential DNA methylation associated with neural cell differentiation in mouse.

Cortese R, Lewin J, Bäckdahl L, Krispin M, Wasserkort R, Eckhardt F, Beck S.

PLoS One. 2011;6(10):e26002. doi: 10.1371/journal.pone.0026002. Epub 2011 Oct 18.

PMID:
22028803
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Transcription factor occupancy can mediate active turnover of DNA methylation at regulatory regions.

Feldmann A, Ivanek R, Murr R, Gaidatzis D, Burger L, Schübeler D.

PLoS Genet. 2013;9(12):e1003994. doi: 10.1371/journal.pgen.1003994. Epub 2013 Dec 19.

PMID:
24367273
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Genome-wide survey reveals dynamic widespread tissue-specific changes in DNA methylation during development.

Liang P, Song F, Ghosh S, Morien E, Qin M, Mahmood S, Fujiwara K, Igarashi J, Nagase H, Held WA.

BMC Genomics. 2011 May 11;12(1):231. doi: 10.1186/1471-2164-12-231.

PMID:
21569359
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

The DNA methylation landscape of small cell lung cancer suggests a differentiation defect of neuroendocrine cells.

Kalari S, Jung M, Kernstine KH, Takahashi T, Pfeifer GP.

Oncogene. 2013 Jul 25;32(30):3559-68. doi: 10.1038/onc.2012.362. Epub 2012 Aug 20.

PMID:
22907430
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Lineage-specific DNA methylation in T cells correlates with histone methylation and enhancer activity.

Schmidl C, Klug M, Boeld TJ, Andreesen R, Hoffmann P, Edinger M, Rehli M.

Genome Res. 2009 Jul;19(7):1165-74. doi: 10.1101/gr.091470.109. Epub 2009 Jun 3.

PMID:
19494038
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Genome-wide and parental allele-specific analysis of CTCF and cohesin DNA binding in mouse brain reveals a tissue-specific binding pattern and an association with imprinted differentially methylated regions.

Prickett AR, Barkas N, McCole RB, Hughes S, Amante SM, Schulz R, Oakey RJ.

Genome Res. 2013 Oct;23(10):1624-35. doi: 10.1101/gr.150136.112. Epub 2013 Jun 26.

PMID:
23804403
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

DOT1L-mediated H3K79 methylation in chromatin is dispensable for Wnt pathway-specific and other intestinal epithelial functions.

Ho LL, Sinha A, Verzi M, Bernt KM, Armstrong SA, Shivdasani RA.

Mol Cell Biol. 2013 May;33(9):1735-45. doi: 10.1128/MCB.01463-12. Epub 2013 Feb 19.

PMID:
23428873
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Investigating the relationship of DNA methylation with mutation rate and allele frequency in the human genome.

Xia J, Han L, Zhao Z.

BMC Genomics. 2012;13 Suppl 8:S7. doi: 10.1186/1471-2164-13-S8-S7. Epub 2012 Dec 17.

PMID:
23281708
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Dynamics of adipogenic promoter DNA methylation during clonal culture of human adipose stem cells to senescence.

Noer A, Boquest AC, Collas P.

BMC Cell Biol. 2007 May 29;8:18.

PMID:
17535427
[PubMed - indexed for MEDLINE]
Free PMC Article

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