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Results: 1 to 20 of 94

1.

Go retro and get a GRIP.

Wong K, Adams DJ, Keane TM.

Genome Biol. 2013 Mar 19;14(3):108. doi: 10.1186/gb-2013-14-3-108.

PMID:
23514103
[PubMed - in process]
Free PMC Article
2.

Identification of piggyBac-mediated insertions in Plasmodium berghei by next generation sequencing.

Cao Y, Rui B, Wellems DL, Li M, Chen B, Zhang D, Pan W.

Malar J. 2013 Aug 21;12(1):287. doi: 10.1186/1475-2875-12-287.

PMID:
23961915
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Whole-genome sequences of DA and F344 rats with different susceptibilities to arthritis, autoimmunity, inflammation and cancer.

Guo X, Brenner M, Zhang X, Laragione T, Tai S, Li Y, Bu J, Yin Y, Shah AA, Kwan K, Li Y, Jun W, Gulko PS.

Genetics. 2013 Aug;194(4):1017-28. doi: 10.1534/genetics.113.153049. Epub 2013 May 20.

PMID:
23695301
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Single read and paired end mRNA-Seq Illumina libraries from 10 nanograms total RNA.

Sengupta S, Bolin JM, Ruotti V, Nguyen BK, Thomson JA, Elwell AL, Stewart R.

J Vis Exp. 2011 Oct 27;(56):e3340. doi: 10.3791/3340.

PMID:
22064688
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Diversity through duplication: whole-genome sequencing reveals novel gene retrocopies in the human population.

Richardson SR, Salvador-Palomeque C, Faulkner GJ.

Bioessays. 2014 May;36(5):475-81. doi: 10.1002/bies.201300181. Epub 2014 Feb 25. Erratum in: Bioessays. 2014 May;36(5):538-9.

PMID:
24615986
[PubMed - in process]
6.

Detection and characterization of novel sequence insertions using paired-end next-generation sequencing.

Hajirasouliha I, Hormozdiari F, Alkan C, Kidd JM, Birol I, Eichler EE, Sahinalp SC.

Bioinformatics. 2010 May 15;26(10):1277-83. doi: 10.1093/bioinformatics/btq152. Epub 2010 Apr 12.

PMID:
20385726
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

RetroSeq: transposable element discovery from next-generation sequencing data.

Keane TM, Wong K, Adams DJ.

Bioinformatics. 2013 Feb 1;29(3):389-90. doi: 10.1093/bioinformatics/bts697. Epub 2012 Dec 10.

PMID:
23233656
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Oxygen free radicals in interleukin-1beta-induced glycosaminoglycan production by retro-ocular fibroblasts from normal subjects and Graves' ophthalmopathy patients.

Lu R, Wang P, Wartofsky L, Sutton BD, Zweier JL, Bahn RS, Garrity J, Burman KD.

Thyroid. 1999 Mar;9(3):297-303.

PMID:
10211608
[PubMed - indexed for MEDLINE]
9.

Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS.

Emde AK, Schulz MH, Weese D, Sun R, Vingron M, Kalscheuer VM, Haas SA, Reinert K.

Bioinformatics. 2012 Mar 1;28(5):619-27. doi: 10.1093/bioinformatics/bts019. Epub 2012 Jan 11.

PMID:
22238266
[PubMed - indexed for MEDLINE]
Free Article
10.

Transcriptome analysis of the Portunus trituberculatus: de novo assembly, growth-related gene identification and marker discovery.

Lv J, Liu P, Gao B, Wang Y, Wang Z, Chen P, Li J.

PLoS One. 2014 Apr 10;9(4):e94055. doi: 10.1371/journal.pone.0094055. eCollection 2014.

PMID:
24722690
[PubMed - in process]
Free PMC Article
11.

Somatic retrotransposition in human cancer revealed by whole-genome and exome sequencing.

Helman E, Lawrence MS, Stewart C, Sougnez C, Getz G, Meyerson M.

Genome Res. 2014 Jul;24(7):1053-63. doi: 10.1101/gr.163659.113. Epub 2014 May 13.

PMID:
24823667
[PubMed - in process]
12.

Assessing the feasibility of GS FLX Pyrosequencing for sequencing the Atlantic salmon genome.

Quinn NL, Levenkova N, Chow W, Bouffard P, Boroevich KA, Knight JR, Jarvie TP, Lubieniecki KP, Desany BA, Koop BF, Harkins TT, Davidson WS.

BMC Genomics. 2008 Aug 28;9:404. doi: 10.1186/1471-2164-9-404.

PMID:
18755037
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Abundant sequence divergence in the native Japanese cattle Mishima-Ushi (Bos taurus) detected using whole-genome sequencing.

Tsuda K, Kawahara-Miki R, Sano S, Imai M, Noguchi T, Inayoshi Y, Kono T.

Genomics. 2013 Oct;102(4):372-8. doi: 10.1016/j.ygeno.2013.08.002. Epub 2013 Aug 9.

PMID:
23938316
[PubMed - indexed for MEDLINE]
Free Article
14.

Archived neonatal dried blood spot samples can be used for accurate whole genome and exome-targeted next-generation sequencing.

Hollegaard MV, Grauholm J, Nielsen R, Grove J, Mandrup S, Hougaard DM.

Mol Genet Metab. 2013 Sep-Oct;110(1-2):65-72. doi: 10.1016/j.ymgme.2013.06.004. Epub 2013 Jun 13.

PMID:
23830478
[PubMed - indexed for MEDLINE]
15.

Survey of the Applications of NGS to Whole-Genome Sequencing and Expression Profiling.

Lim JS, Choi BS, Lee JS, Shin C, Yang TJ, Rhee JS, Lee JS, Choi IY.

Genomics Inform. 2012 Mar;10(1):1-8. doi: 10.5808/GI.2012.10.1.1. Epub 2012 Mar 31.

PMID:
23105922
[PubMed]
Free PMC Article
16.

Genome sequencing of bacteria: sequencing, de novo assembly and rapid analysis using open source tools.

Kisand V, Lettieri T.

BMC Genomics. 2013 Apr 1;14:211. doi: 10.1186/1471-2164-14-211.

PMID:
23547799
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Structural and functional-annotation of an equine whole genome oligoarray.

Bright LA, Burgess SC, Chowdhary B, Swiderski CE, McCarthy FM.

BMC Bioinformatics. 2009 Oct 8;10 Suppl 11:S8. doi: 10.1186/1471-2105-10-S11-S8.

PMID:
19811692
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genome-wide DNA polymorphisms in elite indica rice inbreds discovered by whole-genome sequencing.

Subbaiyan GK, Waters DL, Katiyar SK, Sadananda AR, Vaddadi S, Henry RJ.

Plant Biotechnol J. 2012 Aug;10(6):623-34. doi: 10.1111/j.1467-7652.2011.00676.x. Epub 2012 Jan 6.

PMID:
22222031
[PubMed - indexed for MEDLINE]
19.

Evolutionary origin and methylation status of human intronic CpG islands that are not present in mouse.

Rademacher K, Schröder C, Kanber D, Klein-Hitpass L, Wallner S, Zeschnigk M, Horsthemke B.

Genome Biol Evol. 2014 Jun 12;6(7):1579-88. doi: 10.1093/gbe/evu125.

PMID:
24923327
[PubMed - in process]
Free PMC Article
20.

HTS-PEG: a method for high throughput sequencing of the paired-ends of genomic libraries.

Zhou S, Fu Y, Li J, He L, Cai X, Yan Q, Rao X, Huang S, Li G, Wang Y, Xu A.

PLoS One. 2012;7(12):e52257. doi: 10.1371/journal.pone.0052257. Epub 2012 Dec 20.

PMID:
23284958
[PubMed - indexed for MEDLINE]
Free PMC Article

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