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Results: 1 to 20 of 99

1.

DDIG-in: discriminating between disease-associated and neutral non-frameshifting micro-indels.

Zhao H, Yang Y, Lin H, Zhang X, Mort M, Cooper DN, Liu Y, Zhou Y.

Genome Biol. 2013 Mar 13;14(3):R23. doi: 10.1186/gb-2013-14-3-r23.

PMID:
23497682
[PubMed - in process]
Free PMC Article
2.

SIFT Indel: predictions for the functional effects of amino acid insertions/deletions in proteins.

Hu J, Ng PC.

PLoS One. 2013 Oct 23;8(10):e77940. doi: 10.1371/journal.pone.0077940. eCollection 2013.

PMID:
24194902
[PubMed - in process]
Free PMC Article
3.

Impact of human pathogenic micro-insertions and micro-deletions on post-transcriptional regulation.

Zhang X, Lin H, Zhao H, Hao Y, Mort M, Cooper DN, Zhou Y, Liu Y.

Hum Mol Genet. 2014 Jun 1;23(11):3024-34. doi: 10.1093/hmg/ddu019. Epub 2014 Jan 16.

PMID:
24436305
[PubMed - in process]
4.

A comprehensive study of small non-frameshift insertions/deletions in proteins and prediction of their phenotypic effects by a machine learning method (KD4i).

Bermejo-Das-Neves C, Nguyen HN, Poch O, Thompson JD.

BMC Bioinformatics. 2014 Apr 17;15:111. doi: 10.1186/1471-2105-15-111.

PMID:
24742296
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A probabilistic method for the detection and genotyping of small indels from population-scale sequence data.

Bansal V, Libiger O.

Bioinformatics. 2011 Aug 1;27(15):2047-53. doi: 10.1093/bioinformatics/btr344. Epub 2011 Jun 7.

PMID:
21653520
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Predicting the functional effect of amino acid substitutions and indels.

Choi Y, Sims GE, Murphy S, Miller JR, Chan AP.

PLoS One. 2012;7(10):e46688. doi: 10.1371/journal.pone.0046688. Epub 2012 Oct 8.

PMID:
23056405
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Predicting the effects of frameshifting indels.

Hu J, Ng PC.

Genome Biol. 2012 Feb 9;13(2):R9. doi: 10.1186/gb-2012-13-2-r9.

PMID:
22322200
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Prediction of protein-destabilizing polymorphisms by manual curation with protein structure.

Gough CA, Homma K, Yamaguchi-Kabata Y, Shimada MK, Chakraborty R, Fujii Y, Iwama H, Minoshima S, Sakamoto S, Sato Y, Suzuki Y, Tada-Umezaki M, Nishikawa K, Imanishi T, Gojobori T.

PLoS One. 2012;7(11):e50445. doi: 10.1371/journal.pone.0050445. Epub 2012 Nov 26.

PMID:
23189203
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

The origin, evolution, and functional impact of short insertion-deletion variants identified in 179 human genomes.

Montgomery SB, Goode DL, Kvikstad E, Albers CA, Zhang ZD, Mu XJ, Ananda G, Howie B, Karczewski KJ, Smith KS, Anaya V, Richardson R, Davis J; 1000 Genomes Project Consortium, MacArthur DG, Sidow A, Duret L, Gerstein M, Makova KD, Marchini J, McVean G, Lunter G.

Genome Res. 2013 May;23(5):749-61. doi: 10.1101/gr.148718.112. Epub 2013 Mar 11.

PMID:
23478400
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Protein insertions and deletions enabled by neutral roaming in sequence space.

Tóth-Petróczy A, Tawfik DS.

Mol Biol Evol. 2013 Apr;30(4):761-71. doi: 10.1093/molbev/mst003. Epub 2013 Jan 11.

PMID:
23315956
[PubMed - indexed for MEDLINE]
Free Article
11.

Small insertions and deletions (INDELs) in human genomes.

Mullaney JM, Mills RE, Pittard WS, Devine SE.

Hum Mol Genet. 2010 Oct 15;19(R2):R131-6. doi: 10.1093/hmg/ddq400. Epub 2010 Sep 21. Review.

PMID:
20858594
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data.

Wang K, Li M, Hakonarson H.

Nucleic Acids Res. 2010 Sep;38(16):e164. doi: 10.1093/nar/gkq603. Epub 2010 Jul 3.

PMID:
20601685
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Analysis of genomic variation in non-coding elements using population-scale sequencing data from the 1000 Genomes Project.

Mu XJ, Lu ZJ, Kong Y, Lam HY, Gerstein MB.

Nucleic Acids Res. 2011 Sep 1;39(16):7058-76. doi: 10.1093/nar/gkr342. Epub 2011 May 19.

PMID:
21596777
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Fine-scale signatures of molecular evolution reconcile models of indel-associated mutation.

Jovelin R, Cutter AD.

Genome Biol Evol. 2013;5(5):978-86. doi: 10.1093/gbe/evt051.

PMID:
23558593
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Genome and gene alterations by insertions and deletions in the evolution of human and chimpanzee chromosome 22.

Volfovsky N, Oleksyk TK, Cruz KC, Truelove AL, Stephens RM, Smith MW.

BMC Genomics. 2009 Jan 26;10:51. doi: 10.1186/1471-2164-10-51.

PMID:
19171065
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

On programmed ribosomal frameshifting: the alternative proteomes.

Ketteler R.

Front Genet. 2012 Nov 19;3:242. doi: 10.3389/fgene.2012.00242. eCollection 2012.

PMID:
23181069
[PubMed]
Free PMC Article
17.

Exploring the implications of INDELs in neuropsychiatric genetics: challenges and perspectives.

Lemos RR, Souza MB, Oliveira JR.

J Mol Neurosci. 2012 Jul;47(3):419-24. doi: 10.1007/s12031-012-9714-8. Epub 2012 Feb 16.

PMID:
22350990
[PubMed - indexed for MEDLINE]
18.

Impacts of variation in the human genome on gene regulation.

Haraksingh RR, Snyder MP.

J Mol Biol. 2013 Nov 1;425(21):3970-7. doi: 10.1016/j.jmb.2013.07.015. Epub 2013 Jul 16. Review.

PMID:
23871684
[PubMed - indexed for MEDLINE]
Free Article
19.

Hansa: an automated method for discriminating disease and neutral human nsSNPs.

Acharya V, Nagarajaram HA.

Hum Mutat. 2012 Feb;33(2):332-7. doi: 10.1002/humu.21642. Epub 2011 Dec 9.

PMID:
22045683
[PubMed - indexed for MEDLINE]
20.

Characterizing linkage disequilibrium and evaluating imputation power of human genomic insertion-deletion polymorphisms.

Lu JT, Wang Y, Gibbs RA, Yu F.

Genome Biol. 2012 Feb 29;13(2):R15. doi: 10.1186/gb-2012-13-2-r15.

PMID:
22377349
[PubMed - indexed for MEDLINE]
Free PMC Article

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