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Results: 1 to 20 of 95

1.

Retrotransposition of gene transcripts leads to structural variation in mammalian genomes.

Ewing AD, Ballinger TJ, Earl D; Broad Institute Genome Sequencing and Analysis Program and Platform, Harris CC, Ding L, Wilson RK, Haussler D.

Genome Biol. 2013 Mar 13;14(3):R22. doi: 10.1186/gb-2013-14-3-r22.

PMID:
23497673
[PubMed - in process]
Free PMC Article
2.

Somatic retrotransposition in human cancer revealed by whole-genome and exome sequencing.

Helman E, Lawrence MS, Stewart C, Sougnez C, Getz G, Meyerson M.

Genome Res. 2014 Jul;24(7):1053-63. doi: 10.1101/gr.163659.113. Epub 2014 May 13.

PMID:
24823667
[PubMed - in process]
3.

Diversity through duplication: whole-genome sequencing reveals novel gene retrocopies in the human population.

Richardson SR, Salvador-Palomeque C, Faulkner GJ.

Bioessays. 2014 May;36(5):475-81. doi: 10.1002/bies.201300181. Epub 2014 Feb 25. Erratum in: Bioessays. 2014 May;36(5):538-9.

PMID:
24615986
[PubMed - in process]
4.
6.

A genome-wide survey of structural variation between human and chimpanzee.

Newman TL, Tuzun E, Morrison VA, Hayden KE, Ventura M, McGrath SD, Rocchi M, Eichler EE.

Genome Res. 2005 Oct;15(10):1344-56. Epub 2005 Sep 16.

PMID:
16169929
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Retrocopy contributions to the evolution of the human genome.

Baertsch R, Diekhans M, Kent WJ, Haussler D, Brosius J.

BMC Genomics. 2008 Oct 8;9:466. doi: 10.1186/1471-2164-9-466.

PMID:
18842134
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

The birth of new genes by RNA- and DNA-mediated duplication during mammalian evolution.

Jun J, Ryvkin P, Hemphill E, Mandoiu I, Nelson C.

J Comput Biol. 2009 Oct;16(10):1429-44. doi: 10.1089/cmb.2009.0073.

PMID:
19803737
[PubMed - indexed for MEDLINE]
9.

mRNA retrotransposition coupled with 5' inversion as a possible source of new genes.

Kojima KK, Okada N.

Mol Biol Evol. 2009 Jun;26(6):1405-20. doi: 10.1093/molbev/msp050. Epub 2009 Mar 16.

PMID:
19289598
[PubMed - indexed for MEDLINE]
Free Article
10.

The sequence of the human genome.

Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, Zhang Q, Kodira CD, Zheng XH, Chen L, Skupski M, Subramanian G, Thomas PD, Zhang J, Gabor Miklos GL, Nelson C, Broder S, Clark AG, Nadeau J, McKusick VA, Zinder N, Levine AJ, Roberts RJ, Simon M, Slayman C, Hunkapiller M, Bolanos R, Delcher A, Dew I, Fasulo D, Flanigan M, Florea L, Halpern A, Hannenhalli S, Kravitz S, Levy S, Mobarry C, Reinert K, Remington K, Abu-Threideh J, Beasley E, Biddick K, Bonazzi V, Brandon R, Cargill M, Chandramouliswaran I, Charlab R, Chaturvedi K, Deng Z, Di Francesco V, Dunn P, Eilbeck K, Evangelista C, Gabrielian AE, Gan W, Ge W, Gong F, Gu Z, Guan P, Heiman TJ, Higgins ME, Ji RR, Ke Z, Ketchum KA, Lai Z, Lei Y, Li Z, Li J, Liang Y, Lin X, Lu F, Merkulov GV, Milshina N, Moore HM, Naik AK, Narayan VA, Neelam B, Nusskern D, Rusch DB, Salzberg S, Shao W, Shue B, Sun J, Wang Z, Wang A, Wang X, Wang J, Wei M, Wides R, Xiao C, Yan C, Yao A, Ye J, Zhan M, Zhang W, Zhang H, Zhao Q, Zheng L, Zhong F, Zhong W, Zhu S, Zhao S, Gilbert D, Baumhueter S, Spier G, Carter C, Cravchik A, Woodage T, Ali F, An H, Awe A, Baldwin D, Baden H, Barnstead M, Barrow I, Beeson K, Busam D, Carver A, Center A, Cheng ML, Curry L, Danaher S, Davenport L, Desilets R, Dietz S, Dodson K, Doup L, Ferriera S, Garg N, Gluecksmann A, Hart B, Haynes J, Haynes C, Heiner C, Hladun S, Hostin D, Houck J, Howland T, Ibegwam C, Johnson J, Kalush F, Kline L, Koduru S, Love A, Mann F, May D, McCawley S, McIntosh T, McMullen I, Moy M, Moy L, Murphy B, Nelson K, Pfannkoch C, Pratts E, Puri V, Qureshi H, Reardon M, Rodriguez R, Rogers YH, Romblad D, Ruhfel B, Scott R, Sitter C, Smallwood M, Stewart E, Strong R, Suh E, Thomas R, Tint NN, Tse S, Vech C, Wang G, Wetter J, Williams S, Williams M, Windsor S, Winn-Deen E, Wolfe K, Zaveri J, Zaveri K, Abril JF, Guigó R, Campbell MJ, Sjolander KV, Karlak B, Kejariwal A, Mi H, Lazareva B, Hatton T, Narechania A, Diemer K, Muruganujan A, Guo N, Sato S, Bafna V, Istrail S, Lippert R, Schwartz R, Walenz B, Yooseph S, Allen D, Basu A, Baxendale J, Blick L, Caminha M, Carnes-Stine J, Caulk P, Chiang YH, Coyne M, Dahlke C, Mays A, Dombroski M, Donnelly M, Ely D, Esparham S, Fosler C, Gire H, Glanowski S, Glasser K, Glodek A, Gorokhov M, Graham K, Gropman B, Harris M, Heil J, Henderson S, Hoover J, Jennings D, Jordan C, Jordan J, Kasha J, Kagan L, Kraft C, Levitsky A, Lewis M, Liu X, Lopez J, Ma D, Majoros W, McDaniel J, Murphy S, Newman M, Nguyen T, Nguyen N, Nodell M, Pan S, Peck J, Peterson M, Rowe W, Sanders R, Scott J, Simpson M, Smith T, Sprague A, Stockwell T, Turner R, Venter E, Wang M, Wen M, Wu D, Wu M, Xia A, Zandieh A, Zhu X.

Science. 2001 Feb 16;291(5507):1304-51. Erratum in: Science 2001 Jun 5;292(5523):1838.

PMID:
11181995
[PubMed - indexed for MEDLINE]
11.

Alu repeat discovery and characterization within human genomes.

Hormozdiari F, Alkan C, Ventura M, Hajirasouliha I, Malig M, Hach F, Yorukoglu D, Dao P, Bakhshi M, Sahinalp SC, Eichler EE.

Genome Res. 2011 Jun;21(6):840-9. doi: 10.1101/gr.115956.110. Epub 2010 Dec 3.

PMID:
21131385
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

The origin of the RB1 imprint.

Kanber D, Buiting K, Roos C, Gromoll J, Kaya S, Horsthemke B, Lohmann D.

PLoS One. 2013 Nov 25;8(11):e81502. doi: 10.1371/journal.pone.0081502. eCollection 2013.

PMID:
24282601
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Evolutionary origin and methylation status of human intronic CpG islands that are not present in mouse.

Rademacher K, Schröder C, Kanber D, Klein-Hitpass L, Wallner S, Zeschnigk M, Horsthemke B.

Genome Biol Evol. 2014 Jun 12;6(7):1579-88. doi: 10.1093/gbe/evu125.

PMID:
24923327
[PubMed - in process]
Free PMC Article
14.

Towards a comprehensive structural variation map of an individual human genome.

Pang AW, MacDonald JR, Pinto D, Wei J, Rafiq MA, Conrad DF, Park H, Hurles ME, Lee C, Venter JC, Kirkness EF, Levy S, Feuk L, Scherer SW.

Genome Biol. 2010;11(5):R52. doi: 10.1186/gb-2010-11-5-r52. Epub 2010 May 19.

PMID:
20482838
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Discovery of common sequences absent in the human reference genome using pooled samples from next generation sequencing.

Liu Y, Koyutürk M, Maxwell S, Xiang M, Veigl M, Cooper RS, Tayo BO, Li L, LaFramboise T, Wang Z, Zhu X, Chance MR.

BMC Genomics. 2014 Aug 16;15(1):685. doi: 10.1186/1471-2164-15-685.

PMID:
25129063
[PubMed - in process]
Free PMC Article
16.

The genomic landscape shaped by selection on transposable elements across 18 mouse strains.

Nellåker C, Keane TM, Yalcin B, Wong K, Agam A, Belgard TG, Flint J, Adams DJ, Frankel WN, Ponting CP.

Genome Biol. 2012 Jun 15;13(6):R45. doi: 10.1186/gb-2012-13-6-r45.

PMID:
22703977
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Extensive variation between inbred mouse strains due to endogenous L1 retrotransposition.

Akagi K, Li J, Stephens RM, Volfovsky N, Symer DE.

Genome Res. 2008 Jun;18(6):869-80. doi: 10.1101/gr.075770.107. Epub 2008 Apr 1.

PMID:
18381897
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Chimpanzee-specific endogenous retrovirus generates genomic variations in the chimpanzee genome.

Mun S, Lee J, Kim YJ, Kim HS, Han K.

PLoS One. 2014 Jul 2;9(7):e101195. doi: 10.1371/journal.pone.0101195. eCollection 2014.

PMID:
24987855
[PubMed - in process]
Free PMC Article
19.

Analysis of the role of retrotransposition in gene evolution in vertebrates.

Yu Z, Morais D, Ivanga M, Harrison PM.

BMC Bioinformatics. 2007 Aug 24;8:308.

PMID:
17718914
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The complete mitochondrial genomes of two rice planthoppers, Nilaparvata lugens and Laodelphax striatellus: conserved genome rearrangement in Delphacidae and discovery of new characteristics of atp8 and tRNA genes.

Zhang KJ, Zhu WC, Rong X, Zhang YK, Ding XL, Liu J, Chen DS, Du Y, Hong XY.

BMC Genomics. 2013 Jun 22;14:417. doi: 10.1186/1471-2164-14-417.

PMID:
23799924
[PubMed - indexed for MEDLINE]
Free PMC Article

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