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Results: 1 to 20 of 102

1.

Accelerated exon evolution within primate segmental duplications.

Lorente-Galdos B, Bleyhl J, Santpere G, Vives L, Ramírez O, Hernandez J, Anglada R, Cooper GM, Navarro A, Eichler EE, Marques-Bonet T.

Genome Biol. 2013 Jan 29;14(1):R9. doi: 10.1186/gb-2013-14-1-r9.

PMID:
23360670
[PubMed - in process]
Free PMC Article
2.

The sequence of the human genome.

Venter JC, Adams MD, Myers EW, Li PW, Mural RJ, Sutton GG, Smith HO, Yandell M, Evans CA, Holt RA, Gocayne JD, Amanatides P, Ballew RM, Huson DH, Wortman JR, Zhang Q, Kodira CD, Zheng XH, Chen L, Skupski M, Subramanian G, Thomas PD, Zhang J, Gabor Miklos GL, Nelson C, Broder S, Clark AG, Nadeau J, McKusick VA, Zinder N, Levine AJ, Roberts RJ, Simon M, Slayman C, Hunkapiller M, Bolanos R, Delcher A, Dew I, Fasulo D, Flanigan M, Florea L, Halpern A, Hannenhalli S, Kravitz S, Levy S, Mobarry C, Reinert K, Remington K, Abu-Threideh J, Beasley E, Biddick K, Bonazzi V, Brandon R, Cargill M, Chandramouliswaran I, Charlab R, Chaturvedi K, Deng Z, Di Francesco V, Dunn P, Eilbeck K, Evangelista C, Gabrielian AE, Gan W, Ge W, Gong F, Gu Z, Guan P, Heiman TJ, Higgins ME, Ji RR, Ke Z, Ketchum KA, Lai Z, Lei Y, Li Z, Li J, Liang Y, Lin X, Lu F, Merkulov GV, Milshina N, Moore HM, Naik AK, Narayan VA, Neelam B, Nusskern D, Rusch DB, Salzberg S, Shao W, Shue B, Sun J, Wang Z, Wang A, Wang X, Wang J, Wei M, Wides R, Xiao C, Yan C, Yao A, Ye J, Zhan M, Zhang W, Zhang H, Zhao Q, Zheng L, Zhong F, Zhong W, Zhu S, Zhao S, Gilbert D, Baumhueter S, Spier G, Carter C, Cravchik A, Woodage T, Ali F, An H, Awe A, Baldwin D, Baden H, Barnstead M, Barrow I, Beeson K, Busam D, Carver A, Center A, Cheng ML, Curry L, Danaher S, Davenport L, Desilets R, Dietz S, Dodson K, Doup L, Ferriera S, Garg N, Gluecksmann A, Hart B, Haynes J, Haynes C, Heiner C, Hladun S, Hostin D, Houck J, Howland T, Ibegwam C, Johnson J, Kalush F, Kline L, Koduru S, Love A, Mann F, May D, McCawley S, McIntosh T, McMullen I, Moy M, Moy L, Murphy B, Nelson K, Pfannkoch C, Pratts E, Puri V, Qureshi H, Reardon M, Rodriguez R, Rogers YH, Romblad D, Ruhfel B, Scott R, Sitter C, Smallwood M, Stewart E, Strong R, Suh E, Thomas R, Tint NN, Tse S, Vech C, Wang G, Wetter J, Williams S, Williams M, Windsor S, Winn-Deen E, Wolfe K, Zaveri J, Zaveri K, Abril JF, Guigó R, Campbell MJ, Sjolander KV, Karlak B, Kejariwal A, Mi H, Lazareva B, Hatton T, Narechania A, Diemer K, Muruganujan A, Guo N, Sato S, Bafna V, Istrail S, Lippert R, Schwartz R, Walenz B, Yooseph S, Allen D, Basu A, Baxendale J, Blick L, Caminha M, Carnes-Stine J, Caulk P, Chiang YH, Coyne M, Dahlke C, Mays A, Dombroski M, Donnelly M, Ely D, Esparham S, Fosler C, Gire H, Glanowski S, Glasser K, Glodek A, Gorokhov M, Graham K, Gropman B, Harris M, Heil J, Henderson S, Hoover J, Jennings D, Jordan C, Jordan J, Kasha J, Kagan L, Kraft C, Levitsky A, Lewis M, Liu X, Lopez J, Ma D, Majoros W, McDaniel J, Murphy S, Newman M, Nguyen T, Nguyen N, Nodell M, Pan S, Peck J, Peterson M, Rowe W, Sanders R, Scott J, Simpson M, Smith T, Sprague A, Stockwell T, Turner R, Venter E, Wang M, Wen M, Wu D, Wu M, Xia A, Zandieh A, Zhu X.

Science. 2001 Feb 16;291(5507):1304-51. Erratum in: Science 2001 Jun 5;292(5523):1838.

PMID:
11181995
[PubMed - indexed for MEDLINE]
3.

Recent segmental and gene duplications in the mouse genome.

Cheung J, Wilson MD, Zhang J, Khaja R, MacDonald JR, Heng HH, Koop BF, Scherer SW.

Genome Biol. 2003;4(8):R47. Epub 2003 Jul 9.

PMID:
12914656
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Segmental duplications: organization and impact within the current human genome project assembly.

Bailey JA, Yavor AM, Massa HF, Trask BJ, Eichler EE.

Genome Res. 2001 Jun;11(6):1005-17.

PMID:
11381028
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Analysis of recent segmental duplications in the bovine genome.

Liu GE, Ventura M, Cellamare A, Chen L, Cheng Z, Zhu B, Li C, Song J, Eichler EE.

BMC Genomics. 2009 Dec 1;10:571. doi: 10.1186/1471-2164-10-571.

PMID:
19951423
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Noncoding sequences near duplicated genes evolve rapidly.

Kostka D, Hahn MW, Pollard KS.

Genome Biol Evol. 2010;2:518-33. doi: 10.1093/gbe/evq037. Epub 2010 Jun 29.

PMID:
20660939
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

The natural history of class I primate alcohol dehydrogenases includes gene duplication, gene loss, and gene conversion.

Carrigan MA, Uryasev O, Davis RP, Zhai L, Hurley TD, Benner SA.

PLoS One. 2012;7(7):e41175. doi: 10.1371/journal.pone.0041175. Epub 2012 Jul 31.

PMID:
22859968
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Association of microsatellite pairs with segmental duplications in insect genomes.

Behura SK, Severson DW.

BMC Genomics. 2013 Dec 21;14:907. doi: 10.1186/1471-2164-14-907.

PMID:
24359442
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Rapid evolution and copy number variation of primate RHOXF2, an X-linked homeobox gene involved in male reproduction and possibly brain function.

Niu AL, Wang YQ, Zhang H, Liao CH, Wang JK, Zhang R, Che J, Su B.

BMC Evol Biol. 2011 Oct 12;11:298. doi: 10.1186/1471-2148-11-298.

PMID:
21988730
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Enrichment of segmental duplications in regions of breaks of synteny between the human and mouse genomes suggest their involvement in evolutionary rearrangements.

Armengol L, Pujana MA, Cheung J, Scherer SW, Estivill X.

Hum Mol Genet. 2003 Sep 1;12(17):2201-8. Epub 2003 Jul 8.

PMID:
12915466
[PubMed - indexed for MEDLINE]
Free Article
11.

High divergence in primate-specific duplicated regions: human and chimpanzee chorionic gonadotropin beta genes.

Hallast P, Saarela J, Palotie A, Laan M.

BMC Evol Biol. 2008 Jul 7;8:195. doi: 10.1186/1471-2148-8-195.

PMID:
18606016
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Analysis of segmental duplications and genome assembly in the mouse.

Bailey JA, Church DM, Ventura M, Rocchi M, Eichler EE.

Genome Res. 2004 May;14(5):789-801.

PMID:
15123579
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Human-specific duplication and mosaic transcripts: the recent paralogous structure of chromosome 22.

Bailey JA, Yavor AM, Viggiano L, Misceo D, Horvath JE, Archidiacono N, Schwartz S, Rocchi M, Eichler EE.

Am J Hum Genet. 2002 Jan;70(1):83-100. Epub 2001 Nov 30.

PMID:
11731936
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Hotspots of biased nucleotide substitutions in human genes.

Berglund J, Pollard KS, Webster MT.

PLoS Biol. 2009 Jan 27;7(1):e26. doi: 10.1371/journal.pbio.1000026.

PMID:
19175294
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A non-human primate BAC resource to study interchromosomal segmental duplications.

Kirsch S, Hodler C, Schempp W.

Cytogenet Genome Res. 2009;125(4):253-9. doi: 10.1159/000235930. Epub 2009 Oct 27.

PMID:
19864887
[PubMed - indexed for MEDLINE]
16.

Intron gain and loss in segmentally duplicated genes in rice.

Lin H, Zhu W, Silva JC, Gu X, Buell CR.

Genome Biol. 2006;7(5):R41. Epub 2006 May 23.

PMID:
16719932
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

A preliminary comparative analysis of primate segmental duplications shows elevated substitution rates and a great-ape expansion of intrachromosomal duplications.

She X, Liu G, Ventura M, Zhao S, Misceo D, Roberto R, Cardone MF, Rocchi M; NISC Comparative Sequencing Program, Green ED, Archidiacano N, Eichler EE.

Genome Res. 2006 May;16(5):576-83. Epub 2006 Apr 10.

PMID:
16606706
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

DupMasker: a tool for annotating primate segmental duplications.

Jiang Z, Hubley R, Smit A, Eichler EE.

Genome Res. 2008 Aug;18(8):1362-8. doi: 10.1101/gr.078477.108. Epub 2008 May 23.

PMID:
18502942
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genome reference and sequence variation in the large repetitive central exon of human MUC5AC.

Guo X, Zheng S, Dang H, Pace RG, Stonebraker JR, Jones CD, Boellmann F, Yuan G, Haridass P, Fedrigo O, Corcoran DL, Seibold MA, Ranade SS, Knowles MR, O'Neal WK, Voynow JA.

Am J Respir Cell Mol Biol. 2014 Jan;50(1):223-32. doi: 10.1165/rcmb.2013-0235OC.

PMID:
24010879
[PubMed - indexed for MEDLINE]
20.

Recent segmental duplications in the human genome.

Bailey JA, Gu Z, Clark RA, Reinert K, Samonte RV, Schwartz S, Adams MD, Myers EW, Li PW, Eichler EE.

Science. 2002 Aug 9;297(5583):1003-7.

PMID:
12169732
[PubMed - indexed for MEDLINE]
Free Article

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