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Results: 1 to 20 of 87

1.

Differential analysis of high-throughput quantitative genetic interaction data.

Bean GJ, Ideker T.

Genome Biol. 2012 Dec 26;13(12):R123. doi: 10.1186/gb-2012-13-12-r123.

PMID:
23268787
[PubMed - in process]
Free PMC Article
2.

Quantitative maps of genetic interactions in yeast - comparative evaluation and integrative analysis.

Lindén RO, Eronen VP, Aittokallio T.

BMC Syst Biol. 2011 Mar 24;5:45. doi: 10.1186/1752-0509-5-45.

PMID:
21435228
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Imputing and predicting quantitative genetic interactions in epistatic MAPs.

Ryan C, Cagney G, Krogan N, Cunningham P, Greene D.

Methods Mol Biol. 2011;781:353-61. doi: 10.1007/978-1-61779-276-2_17.

PMID:
21877290
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Array-based synthetic genetic screens to map bacterial pathways and functional networks in Escherichia coli.

Babu M, Gagarinova A, Emili A.

Methods Mol Biol. 2011;781:99-126. doi: 10.1007/978-1-61779-276-2_7.

PMID:
21877280
[PubMed - indexed for MEDLINE]
5.

Array-based synthetic genetic screens to map bacterial pathways and functional networks in Escherichia coli.

Babu M, Gagarinova A, Greenblatt J, Emili A.

Methods Mol Biol. 2011;765:125-53. doi: 10.1007/978-1-61779-197-0_9.

PMID:
21815091
[PubMed - indexed for MEDLINE]
6.

EPSILON: an eQTL prioritization framework using similarity measures derived from local networks.

Verbeke LP, Cloots L, Demeester P, Fostier J, Marchal K.

Bioinformatics. 2013 May 15;29(10):1308-16. doi: 10.1093/bioinformatics/btt142. Epub 2013 Apr 16.

PMID:
23595663
[PubMed - indexed for MEDLINE]
Free Article
7.

Conserved and differential gene interactions in dynamical biological systems.

Ouyang Z, Song M, Güth R, Ha TJ, Larouche M, Goldowitz D.

Bioinformatics. 2011 Oct 15;27(20):2851-8. doi: 10.1093/bioinformatics/btr472. Epub 2011 Aug 11.

PMID:
21840874
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Inference of gene regulatory networks from genome-wide knockout fitness data.

Wang L, Wang X, Arkin AP, Samoilov MS.

Bioinformatics. 2013 Feb 1;29(3):338-46. doi: 10.1093/bioinformatics/bts634. Epub 2012 Dec 27.

PMID:
23271269
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

A statistical framework for differential network analysis from microarray data.

Gill R, Datta S, Datta S.

BMC Bioinformatics. 2010 Feb 19;11:95. doi: 10.1186/1471-2105-11-95.

PMID:
20170493
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

A strategy for extracting and analyzing large-scale quantitative epistatic interaction data.

Collins SR, Schuldiner M, Krogan NJ, Weissman JS.

Genome Biol. 2006;7(7):R63.

PMID:
16859555
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Comparison of profile similarity measures for genetic interaction networks.

Deshpande R, Vandersluis B, Myers CL.

PLoS One. 2013 Jul 10;8(7):e68664. doi: 10.1371/journal.pone.0068664. Print 2013.

PMID:
23874711
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Fly-DPI: database of protein interactomes for D. melanogaster in the approach of systems biology.

Lin CY, Chen SH, Cho CS, Chen CL, Lin FK, Lin CH, Chen PY, Lo CZ, Hsiung CA.

BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S18.

PMID:
17254302
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Using iterative cluster merging with improved gap statistics to perform online phenotype discovery in the context of high-throughput RNAi screens.

Yin Z, Zhou X, Bakal C, Li F, Sun Y, Perrimon N, Wong ST.

BMC Bioinformatics. 2008 Jun 5;9:264. doi: 10.1186/1471-2105-9-264.

PMID:
18534020
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

iMir: an integrated pipeline for high-throughput analysis of small non-coding RNA data obtained by smallRNA-Seq.

Giurato G, De Filippo MR, Rinaldi A, Hashim A, Nassa G, Ravo M, Rizzo F, Tarallo R, Weisz A.

BMC Bioinformatics. 2013 Dec 13;14:362. doi: 10.1186/1471-2105-14-362.

PMID:
24330401
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

SAMNet: a network-based approach to integrate multi-dimensional high throughput datasets.

Gosline SJ, Spencer SJ, Ursu O, Fraenkel E.

Integr Biol (Camb). 2012 Nov;4(11):1415-27. doi: 10.1039/c2ib20072d.

PMID:
23060147
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Synthetic genetic array (SGA) analysis in Saccharomyces cerevisiae and Schizosaccharomyces pombe.

Baryshnikova A, Costanzo M, Dixon S, Vizeacoumar FJ, Myers CL, Andrews B, Boone C.

Methods Enzymol. 2010;470:145-79. doi: 10.1016/S0076-6879(10)70007-0. Epub 2010 Mar 1.

PMID:
20946810
[PubMed - indexed for MEDLINE]
17.

Cyber-T web server: differential analysis of high-throughput data.

Kayala MA, Baldi P.

Nucleic Acids Res. 2012 Jul;40(Web Server issue):W553-9. doi: 10.1093/nar/gks420. Epub 2012 May 16.

PMID:
22600740
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Accurate, precise modeling of cell proliferation kinetics from time-lapse imaging and automated image analysis of agar yeast culture arrays.

Shah NA, Laws RJ, Wardman B, Zhao LP, Hartman JL 4th.

BMC Syst Biol. 2007 Jan 8;1:3.

PMID:
17408510
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Whole-proteome prediction of protein function via graph-theoretic analysis of interaction maps.

Nabieva E, Jim K, Agarwal A, Chazelle B, Singh M.

Bioinformatics. 2005 Jun;21 Suppl 1:i302-10.

PMID:
15961472
[PubMed - indexed for MEDLINE]
Free Article
20.

Filtering high-throughput protein-protein interaction data using a combination of genomic features.

Patil A, Nakamura H.

BMC Bioinformatics. 2005 Apr 18;6:100.

PMID:
15833142
[PubMed - indexed for MEDLINE]
Free PMC Article

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