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Results: 1 to 20 of 90

1.

cnvHiTSeq: integrative models for high-resolution copy number variation detection and genotyping using population sequencing data.

Bellos E, Johnson MR, M Coin LJ.

Genome Biol. 2012 Dec 22;13(12):R120. doi: 10.1186/gb-2012-13-12-r120.

PMID:
23259578
[PubMed - in process]
Free PMC Article
2.

Computational tools for copy number variation (CNV) detection using next-generation sequencing data: features and perspectives.

Zhao M, Wang Q, Wang Q, Jia P, Zhao Z.

BMC Bioinformatics. 2013;14 Suppl 11:S1. doi: 10.1186/1471-2105-14-S11-S1. Epub 2013 Sep 13.

PMID:
24564169
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

cnvOffSeq: detecting intergenic copy number variation using off-target exome sequencing data.

Bellos E, Coin LJ.

Bioinformatics. 2014 Sep 1;30(17):i639-i645. doi: 10.1093/bioinformatics/btu475.

PMID:
25161258
[PubMed - in process]
Free PMC Article
4.

Comparative studies of copy number variation detection methods for next-generation sequencing technologies.

Duan J, Zhang JG, Deng HW, Wang YP.

PLoS One. 2013;8(3):e59128. doi: 10.1371/journal.pone.0059128. Epub 2013 Mar 20.

PMID:
23527109
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A probabilistic method for the detection and genotyping of small indels from population-scale sequence data.

Bansal V, Libiger O.

Bioinformatics. 2011 Aug 1;27(15):2047-53. doi: 10.1093/bioinformatics/btr344. Epub 2011 Jun 7.

PMID:
21653520
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

CNV-seq, a new method to detect copy number variation using high-throughput sequencing.

Xie C, Tammi MT.

BMC Bioinformatics. 2009 Mar 6;10:80. doi: 10.1186/1471-2105-10-80.

PMID:
19267900
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Diagnosis of copy number variation by Illumina next generation sequencing is comparable in performance to oligonucleotide array comparative genomic hybridisation.

Hayes JL, Tzika A, Thygesen H, Berri S, Wood HM, Hewitt S, Pendlebury M, Coates A, Willoughby L, Watson CM, Rabbitts P, Roberts P, Taylor GR.

Genomics. 2013 Sep;102(3):174-81. doi: 10.1016/j.ygeno.2013.04.006. Epub 2013 Apr 15.

PMID:
23598253
[PubMed - indexed for MEDLINE]
8.

CNV Workshop: an integrated platform for high-throughput copy number variation discovery and clinical diagnostics.

Gai X, Perin JC, Murphy K, O'Hara R, D'arcy M, Wenocur A, Xie HM, Rappaport EF, Shaikh TH, White PS.

BMC Bioinformatics. 2010 Feb 4;11:74. doi: 10.1186/1471-2105-11-74.

PMID:
20132550
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing.

Abyzov A, Urban AE, Snyder M, Gerstein M.

Genome Res. 2011 Jun;21(6):974-84. doi: 10.1101/gr.114876.110. Epub 2011 Feb 7.

PMID:
21324876
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Copy Number Variation detection from 1000 Genomes Project exon capture sequencing data.

Wu J, Grzeda KR, Stewart C, Grubert F, Urban AE, Snyder MP, Marth GT.

BMC Bioinformatics. 2012 Nov 17;13:305. doi: 10.1186/1471-2105-13-305.

PMID:
23157288
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

cn.MOPS: mixture of Poissons for discovering copy number variations in next-generation sequencing data with a low false discovery rate.

Klambauer G, Schwarzbauer K, Mayr A, Clevert DA, Mitterecker A, Bodenhofer U, Hochreiter S.

Nucleic Acids Res. 2012 May;40(9):e69. doi: 10.1093/nar/gks003. Epub 2012 Feb 1.

PMID:
22302147
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Improving detection of copy-number variation by simultaneous bias correction and read-depth segmentation.

Szatkiewicz JP, Wang W, Sullivan PF, Wang W, Sun W.

Nucleic Acids Res. 2013 Feb 1;41(3):1519-32. doi: 10.1093/nar/gks1363. Epub 2012 Dec 28.

PMID:
23275535
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Global assessment of genomic variation in cattle by genome resequencing and high-throughput genotyping.

Zhan B, Fadista J, Thomsen B, Hedegaard J, Panitz F, Bendixen C.

BMC Genomics. 2011 Nov 14;12:557. doi: 10.1186/1471-2164-12-557.

PMID:
22082336
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Comparative study of exome copy number variation estimation tools using array comparative genomic hybridization as control.

Guo Y, Sheng Q, Samuels DC, Lehmann B, Bauer JA, Pietenpol J, Shyr Y.

Biomed Res Int. 2013;2013:915636. doi: 10.1155/2013/915636. Epub 2013 Nov 4.

PMID:
24303503
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

CNstream: a method for the identification and genotyping of copy number polymorphisms using Illumina microarrays.

Alonso A, Julià A, Tortosa R, Canaleta C, Cañete JD, Ballina J, Balsa A, Tornero J, Marsal S.

BMC Bioinformatics. 2010 May 19;11:264. doi: 10.1186/1471-2105-11-264.

PMID:
20482829
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

cn.FARMS: a latent variable model to detect copy number variations in microarray data with a low false discovery rate.

Clevert DA, Mitterecker A, Mayr A, Klambauer G, Tuefferd M, De Bondt A, Talloen W, Göhlmann H, Hochreiter S.

Nucleic Acids Res. 2011 Jul;39(12):e79. doi: 10.1093/nar/gkr197. Epub 2011 Apr 12.

PMID:
21486749
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Effective normalization for copy number variation detection from whole genome sequencing.

Janevski A, Varadan V, Kamalakaran S, Banerjee N, Dimitrova N.

BMC Genomics. 2012;13 Suppl 6:S16. doi: 10.1186/1471-2164-13-S6-S16. Epub 2012 Oct 26.

PMID:
23134596
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genome-wide algorithm for detecting CNV associations with diseases.

Xu Y, Peng B, Fu Y, Amos CI.

BMC Bioinformatics. 2011 Aug 9;12:331. doi: 10.1186/1471-2105-12-331.

PMID:
21827692
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A multi-sample based method for identifying common CNVs in normal human genomic structure using high-resolution aCGH data.

Park C, Ahn J, Yoon Y, Park S.

PLoS One. 2011;6(10):e26975. doi: 10.1371/journal.pone.0026975. Epub 2011 Oct 31.

PMID:
22073121
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Copy Number Variation Detection via High-Density SNP Genotyping.

Wang K, Bucan M.

CSH Protoc. 2008 Jun 1;2008:pdb.top46. doi: 10.1101/pdb.top46.

PMID:
21356857
[PubMed]

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