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Results: 1 to 20 of 104

1.

Transposable elements reveal a stem cell-specific class of long noncoding RNAs.

Kelley D, Rinn J.

Genome Biol. 2012 Nov 26;13(11):R107. doi: 10.1186/gb-2012-13-11-r107.

PMID:
23181609
[PubMed - in process]
Free PMC Article
2.

Evolutionary dynamics and tissue specificity of human long noncoding RNAs in six mammals.

Washietl S, Kellis M, Garber M.

Genome Res. 2014 Apr;24(4):616-28. doi: 10.1101/gr.165035.113. Epub 2014 Jan 15.

PMID:
24429298
[PubMed - in process]
3.

Genetic and epigenetic regulation of human lincRNA gene expression.

Popadin K, Gutierrez-Arcelus M, Dermitzakis ET, Antonarakis SE.

Am J Hum Genet. 2013 Dec 5;93(6):1015-26. doi: 10.1016/j.ajhg.2013.10.022. Epub 2013 Nov 21.

PMID:
24268656
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Comprehensive characterization of 10,571 mouse large intergenic noncoding RNAs from whole transcriptome sequencing.

Luo H, Sun S, Li P, Bu D, Cao H, Zhao Y.

PLoS One. 2013 Aug 12;8(8):e70835. doi: 10.1371/journal.pone.0070835. eCollection 2013.

PMID:
23951020
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The Intertwining of Transposable Elements and Non-Coding RNAs.

Hadjiargyrou M, Delihas N.

Int J Mol Sci. 2013 Jun 26;14(7):13307-28. doi: 10.3390/ijms140713307.

PMID:
23803660
[PubMed]
Free PMC Article
6.

Potential roles of microRNAs in regulating long intergenic noncoding RNAs.

Juan L, Wang G, Radovich M, Schneider BP, Clare SE, Wang Y, Liu Y.

BMC Med Genomics. 2013;6 Suppl 1:S7. doi: 10.1186/1755-8794-6-S1-S7. Epub 2013 Jan 23.

PMID:
23369519
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Paucity of chimeric gene-transposable element transcripts in the Drosophila melanogaster genome.

Lipatov M, Lenkov K, Petrov DA, Bergman CM.

BMC Biol. 2005 Nov 12;3:24.

PMID:
16283942
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.

Cabili MN, Trapnell C, Goff L, Koziol M, Tazon-Vega B, Regev A, Rinn JL.

Genes Dev. 2011 Sep 15;25(18):1915-27. doi: 10.1101/gad.17446611. Epub 2011 Sep 2.

PMID:
21890647
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs.

Kapusta A, Kronenberg Z, Lynch VJ, Zhuo X, Ramsay L, Bourque G, Yandell M, Feschotte C.

PLoS Genet. 2013 Apr;9(4):e1003470. doi: 10.1371/journal.pgen.1003470. Epub 2013 Apr 25.

PMID:
23637635
[PubMed - in process]
Free PMC Article
10.

Identification of large intergenic non-coding RNAs in bovine muscle using next-generation transcriptomic sequencing.

Billerey C, Boussaha M, Esquerré D, Rebours E, Djari A, Meersseman C, Klopp C, Gautheret D, Rocha D.

BMC Genomics. 2014 Jun 19;15:499. doi: 10.1186/1471-2164-15-499.

PMID:
24948191
[PubMed - in process]
Free PMC Article
11.

Pervasive transcription of the human genome produces thousands of previously unidentified long intergenic noncoding RNAs.

Hangauer MJ, Vaughn IW, McManus MT.

PLoS Genet. 2013 Jun;9(6):e1003569. doi: 10.1371/journal.pgen.1003569. Epub 2013 Jun 20.

PMID:
23818866
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Long intergenic non-coding RNAs (LincRNAs) identified by RNA-seq in breast cancer.

Ding X, Zhu L, Ji T, Zhang X, Wang F, Gan S, Zhao M, Yang H.

PLoS One. 2014 Aug 1;9(8):e103270. doi: 10.1371/journal.pone.0103270. eCollection 2014.

PMID:
25084155
[PubMed - in process]
Free PMC Article
13.

Tissue-specific RNA-Seq in human evoked inflammation identifies blood and adipose LincRNA signatures of cardiometabolic diseases.

Liu Y, Ferguson JF, Xue C, Ballantyne RL, Silverman IM, Gosai SJ, Serfecz J, Morley MP, Gregory BD, Li M, Reilly MP.

Arterioscler Thromb Vasc Biol. 2014 Apr;34(4):902-12. doi: 10.1161/ATVBAHA.113.303123. Epub 2014 Feb 6.

PMID:
24504737
[PubMed - indexed for MEDLINE]
14.

The genomic landscape shaped by selection on transposable elements across 18 mouse strains.

Nellåker C, Keane TM, Yalcin B, Wong K, Agam A, Belgard TG, Flint J, Adams DJ, Frankel WN, Ponting CP.

Genome Biol. 2012 Jun 15;13(6):R45. doi: 10.1186/gb-2012-13-6-r45.

PMID:
22703977
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Computational identification of human long intergenic non-coding RNAs using a GA-SVM algorithm.

Wang Y, Li Y, Wang Q, Lv Y, Wang S, Chen X, Yu X, Jiang W, Li X.

Gene. 2014 Jan 1;533(1):94-9. doi: 10.1016/j.gene.2013.09.118. Epub 2013 Oct 9.

PMID:
24120395
[PubMed - indexed for MEDLINE]
16.

Large-scale discovery of insertion hotspots and preferential integration sites of human transposed elements.

Levy A, Schwartz S, Ast G.

Nucleic Acids Res. 2010 Mar;38(5):1515-30. doi: 10.1093/nar/gkp1134. Epub 2009 Dec 14.

PMID:
20008508
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA.

Polavarapu N, Mariño-Ramírez L, Landsman D, McDonald JF, Jordan IK.

BMC Genomics. 2008 May 17;9:226. doi: 10.1186/1471-2164-9-226.

PMID:
18485226
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Genome-wide identification of long intergenic noncoding RNA genes and their potential association with domestication in pigs.

Zhou ZY, Li AM, Adeola AC, Liu YH, Irwin DM, Xie HB, Zhang YP.

Genome Biol Evol. 2014 Jun 2;6(6):1387-92. doi: 10.1093/gbe/evu113.

PMID:
24891613
[PubMed - in process]
Free PMC Article
19.

Genome organization and gene expression shape the transposable element distribution in the Drosophila melanogaster euchromatin.

Fontanillas P, Hartl DL, Reuter M.

PLoS Genet. 2007 Nov;3(11):e210. Epub 2007 Oct 10.

PMID:
18081425
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Genome-wide identification and functional prediction of novel and drought-responsive lincRNAs in Populus trichocarpa.

Shuai P, Liang D, Tang S, Zhang Z, Ye CY, Su Y, Xia X, Yin W.

J Exp Bot. 2014 Jun 19. pii: eru256. [Epub ahead of print]

PMID:
24948679
[PubMed - as supplied by publisher]
Free PMC Article

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