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Results: 1 to 20 of 102

1.

Cytosine methylation and hydroxymethylation mark DNA for elimination in Oxytricha trifallax.

Bracht JR, Perlman DH, Landweber LF.

Genome Biol. 2012 Oct 17;13(10):R99. doi: 10.1186/gb-2012-13-10-r99.

PMID:
23075511
[PubMed - in process]
Free PMC Article
2.

Strategies for discovery and validation of methylated and hydroxymethylated DNA biomarkers.

Olkhov-Mitsel E, Bapat B.

Cancer Med. 2012 Oct;1(2):237-60. doi: 10.1002/cam4.22. Epub 2012 Sep 14. Review.

PMID:
23342273
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

De novo cytosine methylation in the differentiating macronucleus of the stichotrichous ciliate Stylonychia lemnae.

Juranek S, Wieden HJ, Lipps HJ.

Nucleic Acids Res. 2003 Mar 1;31(5):1387-91.

PMID:
12595545
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Intronic non-CG DNA hydroxymethylation and alternative mRNA splicing in honey bees.

Cingolani P, Cao X, Khetani RS, Chen CC, Coon M, Sammak A, Bollig-Fischer A, Land S, Huang Y, Hudson ME, Garfinkel MD, Zhong S, Robinson GE, Ruden DM.

BMC Genomics. 2013 Sep 30;14:666. doi: 10.1186/1471-2164-14-666.

PMID:
24079845
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Beyond transcriptional silencing: is methylcytosine a widely conserved eukaryotic DNA elimination mechanism?

Bracht JR.

Bioessays. 2014 Apr;36(4):346-52. doi: 10.1002/bies.201300123. Epub 2014 Feb 12.

PMID:
24519896
[PubMed - indexed for MEDLINE]
6.

Functions of DNA methylation and hydroxymethylation in mammalian development.

Guibert S, Weber M.

Curr Top Dev Biol. 2013;104:47-83. doi: 10.1016/B978-0-12-416027-9.00002-4. Review.

PMID:
23587238
[PubMed - indexed for MEDLINE]
7.

The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes.

Swart EC, Bracht JR, Magrini V, Minx P, Chen X, Zhou Y, Khurana JS, Goldman AD, Nowacki M, Schotanus K, Jung S, Fulton RS, Ly A, McGrath S, Haub K, Wiggins JL, Storton D, Matese JC, Parsons L, Chang WJ, Bowen MS, Stover NA, Jones TA, Eddy SR, Herrick GA, Doak TG, Wilson RK, Mardis ER, Landweber LF.

PLoS Biol. 2013;11(1):e1001473. doi: 10.1371/journal.pbio.1001473. Epub 2013 Jan 29.

PMID:
23382650
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Comprehensive DNA methylation and hydroxymethylation analysis in the human brain and its implication in mental disorders.

Kato T, Iwamoto K.

Neuropharmacology. 2014 May;80:133-9. doi: 10.1016/j.neuropharm.2013.12.019. Epub 2014 Jan 2.

PMID:
24389572
[PubMed - in process]
9.

High sensitivity 5-hydroxymethylcytosine detection in Balb/C brain tissue.

Davis T, Vaisvila R.

J Vis Exp. 2011 Feb 1;(48). pii: 2661. doi: 10.3791/2661.

PMID:
21307836
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation.

Ficz G, Branco MR, Seisenberger S, Santos F, Krueger F, Hore TA, Marques CJ, Andrews S, Reik W.

Nature. 2011 May 19;473(7347):398-402. doi: 10.1038/nature10008. Epub 2011 Apr 3.

PMID:
21460836
[PubMed - indexed for MEDLINE]
11.

The CHH motif in sugar beet satellite DNA: a modulator for cytosine methylation.

Zakrzewski F, Schubert V, Viehoever P, Minoche AE, Dohm JC, Himmelbauer H, Weisshaar B, Schmidt T.

Plant J. 2014 Jun;78(6):937-50. doi: 10.1111/tpj.12519. Epub 2014 May 21.

PMID:
24661787
[PubMed - in process]
12.

A permissive chromatin structure is adopted prior to site-specific DNA demethylation of developmentally expressed genes involved in macronuclear differentiation.

Bulic A, Postberg J, Fischer A, J├Ânsson F, Reuter G, Lipps HJ.

Epigenetics Chromatin. 2013 Mar 5;6(1):5. doi: 10.1186/1756-8935-6-5.

PMID:
23497475
[PubMed]
Free PMC Article
13.

Integrated detection of both 5-mC and 5-hmC by high-throughput tag sequencing technology highlights methylation reprogramming of bivalent genes during cellular differentiation.

Gao F, Xia Y, Wang J, Luo H, Gao Z, Han X, Zhang J, Huang X, Yao Y, Lu H, Yi N, Zhou B, Lin Z, Wen B, Zhang X, Yang H, Wang J.

Epigenetics. 2013 Apr;8(4):421-30. doi: 10.4161/epi.24280. Epub 2013 Mar 15.

PMID:
23502161
[PubMed - in process]
Free PMC Article
14.

Mating of the stichotrichous ciliate Oxytricha trifallax induces production of a class of 27 nt small RNAs derived from the parental macronucleus.

Zahler AM, Neeb ZT, Lin A, Katzman S.

PLoS One. 2012;7(8):e42371. doi: 10.1371/journal.pone.0042371. Epub 2012 Aug 10.

PMID:
22900016
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

DNA cytosine methylation in plant development.

Zhang M, Kimatu JN, Xu K, Liu B.

J Genet Genomics. 2010 Jan;37(1):1-12. doi: 10.1016/S1673-8527(09)60020-5. Review.

PMID:
20171573
[PubMed - indexed for MEDLINE]
16.

RNA-mediated epigenetic programming of a genome-rearrangement pathway.

Nowacki M, Vijayan V, Zhou Y, Schotanus K, Doak TG, Landweber LF.

Nature. 2008 Jan 10;451(7175):153-8. Epub 2007 Nov 28.

PMID:
18046331
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Cytosine methylation is a conserved epigenetic feature found throughout the phylum Platyhelminthes.

Geyer KK, Chalmers IW, Mackintosh N, Hirst JE, Geoghegan R, Badets M, Brophy PM, Brehm K, Hoffmann KF.

BMC Genomics. 2013 Jul 9;14:462. doi: 10.1186/1471-2164-14-462.

PMID:
23837670
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

MLML: consistent simultaneous estimates of DNA methylation and hydroxymethylation.

Qu J, Zhou M, Song Q, Hong EE, Smith AD.

Bioinformatics. 2013 Oct 15;29(20):2645-6. doi: 10.1093/bioinformatics/btt459. Epub 2013 Aug 21.

PMID:
23969133
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Genome-wide comparison of DNA hydroxymethylation in mouse embryonic stem cells and neural progenitor cells by a new comparative hMeDIP-seq method.

Tan L, Xiong L, Xu W, Wu F, Huang N, Xu Y, Kong L, Zheng L, Schwartz L, Shi Y, Shi YG.

Nucleic Acids Res. 2013 Apr;41(7):e84. doi: 10.1093/nar/gkt091. Epub 2013 Feb 13.

PMID:
23408859
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Replacement of Oct4 by Tet1 during iPSC induction reveals an important role of DNA methylation and hydroxymethylation in reprogramming.

Gao Y, Chen J, Li K, Wu T, Huang B, Liu W, Kou X, Zhang Y, Huang H, Jiang Y, Yao C, Liu X, Lu Z, Xu Z, Kang L, Chen J, Wang H, Cai T, Gao S.

Cell Stem Cell. 2013 Apr 4;12(4):453-69. doi: 10.1016/j.stem.2013.02.005. Epub 2013 Mar 14.

PMID:
23499384
[PubMed - indexed for MEDLINE]
Free Article

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