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Results: 1 to 20 of 97

1.

The mouse DXZ4 homolog retains Ctcf binding and proximity to Pls3 despite substantial organizational differences compared to the primate macrosatellite.

Horakova AH, Calabrese JM, McLaughlin CR, Tremblay DC, Magnuson T, Chadwick BP.

Genome Biol. 2012 Aug 20;13(8):R70. doi: 10.1186/gb-2012-13-8-r70.

PMID:
22906166
[PubMed - in process]
Free PMC Article
2.

Characterization of DXZ4 conservation in primates implies important functional roles for CTCF binding, array expression and tandem repeat organization on the X chromosome.

McLaughlin CR, Chadwick BP.

Genome Biol. 2011;12(4):R37. doi: 10.1186/gb-2011-12-4-r37. Epub 2011 Apr 13.

PMID:
21489251
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

DXZ4 chromatin adopts an opposing conformation to that of the surrounding chromosome and acquires a novel inactive X-specific role involving CTCF and antisense transcripts.

Chadwick BP.

Genome Res. 2008 Aug;18(8):1259-69. doi: 10.1101/gr.075713.107. Epub 2008 May 2.

PMID:
18456864
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

The macrosatellite DXZ4 mediates CTCF-dependent long-range intrachromosomal interactions on the human inactive X chromosome.

Horakova AH, Moseley SC, McLaughlin CR, Tremblay DC, Chadwick BP.

Hum Mol Genet. 2012 Oct 15;21(20):4367-77. Epub 2012 Jul 12.

PMID:
22791747
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

YY1 associates with the macrosatellite DXZ4 on the inactive X chromosome and binds with CTCF to a hypomethylated form in some male carcinomas.

Moseley SC, Rizkallah R, Tremblay DC, Anderson BR, Hurt MM, Chadwick BP.

Nucleic Acids Res. 2012 Feb;40(4):1596-608. doi: 10.1093/nar/gkr964. Epub 2011 Nov 7.

PMID:
22064860
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Variation in array size, monomer composition and expression of the macrosatellite DXZ4.

Tremblay DC, Moseley S, Chadwick BP.

PLoS One. 2011 Apr 22;6(4):e18969. doi: 10.1371/journal.pone.0018969.

PMID:
21544201
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Familial cases of point mutations in the XIST promoter reveal a correlation between CTCF binding and pre-emptive choices of X chromosome inactivation.

Pugacheva EM, Tiwari VK, Abdullaev Z, Vostrov AA, Flanagan PT, Quitschke WW, Loukinov DI, Ohlsson R, Lobanenkov VV.

Hum Mol Genet. 2005 Apr 1;14(7):953-65. Epub 2005 Feb 24.

PMID:
15731119
[PubMed - indexed for MEDLINE]
Free Article
8.

Macrosatellite epigenetics: the two faces of DXZ4 and D4Z4.

Chadwick BP.

Chromosoma. 2009 Dec;118(6):675-81. doi: 10.1007/s00412-009-0233-5. Epub 2009 Aug 19. Review.

PMID:
19690880
[PubMed - indexed for MEDLINE]
9.

Small RNA Expression from the Human Macrosatellite DXZ4.

Pohlers M, Calabrese JM, Magnuson T.

G3 (Bethesda). 2014 Aug 21. pii: g3.114.012260. doi: 10.1534/g3.114.012260. [Epub ahead of print]

PMID:
25147189
[PubMed - as supplied by publisher]
Free Article
10.

A novel GC-rich human macrosatellite VNTR in Xq24 is differentially methylated on active and inactive X chromosomes.

Giacalone J, Friedes J, Francke U.

Nat Genet. 1992 May;1(2):137-43.

PMID:
1302007
[PubMed - indexed for MEDLINE]
11.

A novel tRNA variable number tandem repeat at human chromosome 1q23.3 is implicated as a boundary element based on conservation of a CTCF motif in mouse.

Darrow EM, Chadwick BP.

Nucleic Acids Res. 2014;42(10):6421-35. doi: 10.1093/nar/gku280. Epub 2014 Apr 21.

PMID:
24753417
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Chromatin of the Barr body: histone and non-histone proteins associated with or excluded from the inactive X chromosome.

Chadwick BP, Willard HF.

Hum Mol Genet. 2003 Sep 1;12(17):2167-78. Epub 2003 Jul 15.

PMID:
12915472
[PubMed - indexed for MEDLINE]
Free Article
13.

Co-binding by YY1 identifies the transcriptionally active, highly conserved set of CTCF-bound regions in primate genomes.

Schwalie PC, Ward MC, Cain CE, Faure AJ, Gilad Y, Odom DT, Flicek P.

Genome Biol. 2013 Dec 31;14(12):R148. doi: 10.1186/gb-2013-14-12-r148.

PMID:
24380390
[PubMed - in process]
Free PMC Article
14.

Genome-wide and parental allele-specific analysis of CTCF and cohesin DNA binding in mouse brain reveals a tissue-specific binding pattern and an association with imprinted differentially methylated regions.

Prickett AR, Barkas N, McCole RB, Hughes S, Amante SM, Schulz R, Oakey RJ.

Genome Res. 2013 Oct;23(10):1624-35. doi: 10.1101/gr.150136.112. Epub 2013 Jun 26.

PMID:
23804403
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Localization of human midisatellite and macrosatellite DNA sequences on chromosomes 1 and X in the great apes.

Samonte RV, Conte RA, Verma RS.

J Hum Genet. 1999;44(1):57-9.

PMID:
9929980
[PubMed - indexed for MEDLINE]
16.

Boundaries between chromosomal domains of X inactivation and escape bind CTCF and lack CpG methylation during early development.

Filippova GN, Cheng MK, Moore JM, Truong JP, Hu YJ, Nguyen DK, Tsuchiya KD, Disteche CM.

Dev Cell. 2005 Jan;8(1):31-42.

PMID:
15669143
[PubMed - indexed for MEDLINE]
17.

Identification of a Ctcf cofactor, Yy1, for the X chromosome binary switch.

Donohoe ME, Zhang LF, Xu N, Shi Y, Lee JT.

Mol Cell. 2007 Jan 12;25(1):43-56.

PMID:
17218270
[PubMed - indexed for MEDLINE]
Free Article
18.

A region of euchromatin coincides with an extensive tandem repeat on the mouse (Mus musculus) inactive X chromosome.

Darrow EM, Seberg AP, Das S, Figueroa DM, Sun Z, Moseley SC, Chadwick BP.

Chromosome Res. 2014 Sep;22(3):335-50. doi: 10.1007/s10577-014-9424-x. Epub 2014 May 13.

PMID:
24821208
[PubMed - in process]
19.

5meCpG Epigenetic Marks Neighboring a Primate-Conserved Core Promoter Short Tandem Repeat Indicate X-Chromosome Inactivation.

Machado FB, Machado FB, Faria MA, Lovatel VL, Alves da Silva AF, Radic CP, De Brasi CD, Rios AF, de Sousa Lopes SM, da Silveira LS, Ruiz-Miranda CR, Ramos ES, Medina-Acosta E.

PLoS One. 2014 Jul 31;9(7):e103714. doi: 10.1371/journal.pone.0103714. eCollection 2014.

PMID:
25078280
[PubMed - in process]
Free PMC Article
20.

Direct evidence of allele-specific binding of CTCF and MeCP2 to Tsix in a HPRT-deficient female F₁ hybrid mouse cell line.

Son J, Min NY, Choi JH, Ko YJ, Liang W, Rhee S, Lee KH.

Cytogenet Genome Res. 2012;138(1):11-8. doi: 10.1159/000341503. Epub 2012 Aug 10.

PMID:
22889989
[PubMed - indexed for MEDLINE]
Free Article

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