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Results: 1 to 20 of 117

1.

Genome-wide distribution of 5-formylcytosine in embryonic stem cells is associated with transcription and depends on thymine DNA glycosylase.

Raiber EA, Beraldi D, Ficz G, Burgess HE, Branco MR, Murat P, Oxley D, Booth MJ, Reik W, Balasubramanian S.

Genome Biol. 2012 Aug 17;13(8):R69. doi: 10.1186/gb-2012-13-8-r69.

PMID:
22902005
[PubMed - in process]
Free PMC Article
2.

Transient accumulation of 5-carboxylcytosine indicates involvement of active demethylation in lineage specification of neural stem cells.

Wheldon LM, Abakir A, Ferjentsik Z, Dudnakova T, Strohbuecker S, Christie D, Dai N, Guan S, Foster JM, Corrêa IR Jr, Loose M, Dixon JE, Sottile V, Johnson AD, Ruzov A.

Cell Rep. 2014 Jun 12;7(5):1353-61. doi: 10.1016/j.celrep.2014.05.003. Epub 2014 May 29.

PMID:
24882006
[PubMed - in process]
Free Article
3.

Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming.

Song CX, Szulwach KE, Dai Q, Fu Y, Mao SQ, Lin L, Street C, Li Y, Poidevin M, Wu H, Gao J, Liu P, Li L, Xu GL, Jin P, He C.

Cell. 2013 Apr 25;153(3):678-91. doi: 10.1016/j.cell.2013.04.001. Epub 2013 Apr 18.

PMID:
23602153
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Genome-wide analysis reveals TET- and TDG-dependent 5-methylcytosine oxidation dynamics.

Shen L, Wu H, Diep D, Yamaguchi S, D'Alessio AC, Fung HL, Zhang K, Zhang Y.

Cell. 2013 Apr 25;153(3):692-706. doi: 10.1016/j.cell.2013.04.002. Epub 2013 Apr 18.

PMID:
23602152
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

PRDM14 promotes active DNA demethylation through the ten-eleven translocation (TET)-mediated base excision repair pathway in embryonic stem cells.

Okashita N, Kumaki Y, Ebi K, Nishi M, Okamoto Y, Nakayama M, Hashimoto S, Nakamura T, Sugasawa K, Kojima N, Takada T, Okano M, Seki Y.

Development. 2014 Jan;141(2):269-80. doi: 10.1242/dev.099622. Epub 2013 Dec 11.

PMID:
24335252
[PubMed - indexed for MEDLINE]
Free Article
6.

Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation.

Ficz G, Branco MR, Seisenberger S, Santos F, Krueger F, Hore TA, Marques CJ, Andrews S, Reik W.

Nature. 2011 May 19;473(7347):398-402. doi: 10.1038/nature10008. Epub 2011 Apr 3.

PMID:
21460836
[PubMed - indexed for MEDLINE]
7.

A screen for hydroxymethylcytosine and formylcytosine binding proteins suggests functions in transcription and chromatin regulation.

Iurlaro M, Ficz G, Oxley D, Raiber EA, Bachman M, Booth MJ, Andrews S, Balasubramanian S, Reik W.

Genome Biol. 2013;14(10):R119.

PMID:
24156278
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Dynamic changes in DNA modification states during late gestation male germ line development in the rat.

Rose CM, van den Driesche S, Sharpe RM, Meehan RR, Drake AJ.

Epigenetics Chromatin. 2014 Aug 7;7:19. doi: 10.1186/1756-8935-7-19. eCollection 2014.

PMID:
25225576
[PubMed]
Free PMC Article
9.

Generation and replication-dependent dilution of 5fC and 5caC during mouse preimplantation development.

Inoue A, Shen L, Dai Q, He C, Zhang Y.

Cell Res. 2011 Dec;21(12):1670-6. doi: 10.1038/cr.2011.189. Epub 2011 Nov 29.

PMID:
22124233
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Role of Tet proteins in enhancer activity and telomere elongation.

Lu F, Liu Y, Jiang L, Yamaguchi S, Zhang Y.

Genes Dev. 2014 Sep 15. pii: gad.248005.114. [Epub ahead of print]

PMID:
25223896
[PubMed - as supplied by publisher]
11.

[Oxidation and deamination of nucleobases as an epigenetic tool].

Guz J, Jurgowiak M, Oliński R.

Postepy Hig Med Dosw (Online). 2012 May 24;66:275-86. Review. Polish.

PMID:
22706113
[PubMed - indexed for MEDLINE]
Free Article
12.

Quantitative sequencing of 5-methylcytosine and 5-hydroxymethylcytosine at single-base resolution.

Booth MJ, Branco MR, Ficz G, Oxley D, Krueger F, Reik W, Balasubramanian S.

Science. 2012 May 18;336(6083):934-7. doi: 10.1126/science.1220671. Epub 2012 Apr 26.

PMID:
22539555
[PubMed - indexed for MEDLINE]
Free Article
13.

Thymine DNA glycosylase can rapidly excise 5-formylcytosine and 5-carboxylcytosine: potential implications for active demethylation of CpG sites.

Maiti A, Drohat AC.

J Biol Chem. 2011 Oct 14;286(41):35334-8. doi: 10.1074/jbc.C111.284620. Epub 2011 Aug 23.

PMID:
21862836
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Active DNA demethylation in post-mitotic neurons: a reason for optimism.

Gavin DP, Chase KA, Sharma RP.

Neuropharmacology. 2013 Dec;75:233-45. doi: 10.1016/j.neuropharm.2013.07.036. Epub 2013 Aug 16. Review.

PMID:
23958448
[PubMed - indexed for MEDLINE]
15.

Excision of 5-hydroxymethyluracil and 5-carboxylcytosine by the thymine DNA glycosylase domain: its structural basis and implications for active DNA demethylation.

Hashimoto H, Hong S, Bhagwat AS, Zhang X, Cheng X.

Nucleic Acids Res. 2012 Nov 1;40(20):10203-14. doi: 10.1093/nar/gks845. Epub 2012 Sep 8.

PMID:
22962365
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells.

Pastor WA, Pape UJ, Huang Y, Henderson HR, Lister R, Ko M, McLoughlin EM, Brudno Y, Mahapatra S, Kapranov P, Tahiliani M, Daley GQ, Liu XS, Ecker JR, Milos PM, Agarwal S, Rao A.

Nature. 2011 May 19;473(7347):394-7. doi: 10.1038/nature10102. Epub 2011 May 8.

PMID:
21552279
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Enzymatic analysis of Tet proteins: key enzymes in the metabolism of DNA methylation.

Shen L, Zhang Y.

Methods Enzymol. 2012;512:93-105. doi: 10.1016/B978-0-12-391940-3.00005-6.

PMID:
22910204
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Quantitative sequencing of 5-formylcytosine in DNA at single-base resolution.

Booth MJ, Marsico G, Bachman M, Beraldi D, Balasubramanian S.

Nat Chem. 2014 May;6(5):435-40. doi: 10.1038/nchem.1893. Epub 2014 Mar 23. Erratum in: Nat Chem. Nat Chem. 2014;6(6):553.

PMID:
24755596
[PubMed - indexed for MEDLINE]
19.

Embryonic lethal phenotype reveals a function of TDG in maintaining epigenetic stability.

Cortázar D, Kunz C, Selfridge J, Lettieri T, Saito Y, MacDougall E, Wirz A, Schuermann D, Jacobs AL, Siegrist F, Steinacher R, Jiricny J, Bird A, Schär P.

Nature. 2011 Feb 17;470(7334):419-23. doi: 10.1038/nature09672. Epub 2011 Jan 30.

PMID:
21278727
[PubMed - indexed for MEDLINE]
20.

Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.

He YF, Li BZ, Li Z, Liu P, Wang Y, Tang Q, Ding J, Jia Y, Chen Z, Li L, Sun Y, Li X, Dai Q, Song CX, Zhang K, He C, Xu GL.

Science. 2011 Sep 2;333(6047):1303-7. doi: 10.1126/science.1210944. Epub 2011 Aug 4.

PMID:
21817016
[PubMed - indexed for MEDLINE]
Free PMC Article

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