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Results: 1 to 20 of 90

1.

An encyclopedia of mouse DNA elements (Mouse ENCODE).

Mouse ENCODE Consortium, Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, Gingeras T, Gilbert DM, Groudine M, Bender M, Kaul R, Canfield T, Giste E, Johnson A, Zhang M, Balasundaram G, Byron R, Roach V, Sabo PJ, Sandstrom R, Stehling AS, Thurman RE, Weissman SM, Cayting P, Hariharan M, Lian J, Cheng Y, Landt SG, Ma Z, Wold BJ, Dekker J, Crawford GE, Keller CA, Wu W, Morrissey C, Kumar SA, Mishra T, Jain D, Byrska-Bishop M, Blankenberg D, Lajoie1 BR, Jain G, Sanyal A, Chen KB, Denas O, Taylor J, Blobel GA, Weiss MJ, Pimkin M, Deng W, Marinov GK, Williams BA, Fisher-Aylor KI, Desalvo G, Kiralusha A, Trout D, Amrhein H, Mortazavi A, Edsall L, McCleary D, Kuan S, Shen Y, Yue F, Ye Z, Davis CA, Zaleski C, Jha S, Xue C, Dobin A, Lin W, Fastuca M, Wang H, Guigo R, Djebali S, Lagarde J, Ryba T, Sasaki T, Malladi VS, Cline MS, Kirkup VM, Learned K, Rosenbloom KR, Kent WJ, Feingold EA, Good PJ, Pazin M, Lowdon RF, Adams LB.

Genome Biol. 2012 Aug 13;13(8):418.

PMID:
22889292
[PubMed - as supplied by publisher]
Free PMC Article
2.

The ENCODE (ENCyclopedia Of DNA Elements) Project.

ENCODE Project Consortium.

Science. 2004 Oct 22;306(5696):636-40.

PMID:
15499007
[PubMed - indexed for MEDLINE]
3.

The ENCODE project: implications for psychiatric genetics.

Kavanagh DH, Dwyer S, O'Donovan MC, Owen MJ.

Mol Psychiatry. 2013 May;18(5):540-2. doi: 10.1038/mp.2013.13. Epub 2013 Mar 12. Review.

PMID:
23478746
[PubMed - indexed for MEDLINE]
4.

Extrapolating ENCODE data to the whole human genome.

Costantini M, Di Filippo M, Bernardi G.

Gene. 2008 Aug 1;419(1-2):66-9. doi: 10.1016/j.gene.2008.02.013. Epub 2008 Feb 21.

PMID:
18378099
[PubMed - indexed for MEDLINE]
5.

[The ENCODE project and functional genomics studies].

Ding N, Qu H, Fang X.

Yi Chuan. 2014 Mar;36(3):237-47. Review. Chinese.

PMID:
24846964
[PubMed - indexed for MEDLINE]
6.

The ENCODE Project at UC Santa Cruz.

Thomas DJ, Rosenbloom KR, Clawson H, Hinrichs AS, Trumbower H, Raney BJ, Karolchik D, Barber GP, Harte RA, Hillman-Jackson J, Kuhn RM, Rhead BL, Smith KE, Thakkapallayil A, Zweig AS; ENCODE Project Consortium, Haussler D, Kent WJ.

Nucleic Acids Res. 2007 Jan;35(Database issue):D663-7. Epub 2006 Dec 13.

PMID:
17166863
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

ENCODE data in the UCSC Genome Browser: year 5 update.

Rosenbloom KR, Sloan CA, Malladi VS, Dreszer TR, Learned K, Kirkup VM, Wong MC, Maddren M, Fang R, Heitner SG, Lee BT, Barber GP, Harte RA, Diekhans M, Long JC, Wilder SP, Zweig AS, Karolchik D, Kuhn RM, Haussler D, Kent WJ.

Nucleic Acids Res. 2013 Jan;41(Database issue):D56-63. doi: 10.1093/nar/gks1172. Epub 2012 Nov 27.

PMID:
23193274
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

A brief review on the Human Encyclopedia of DNA Elements (ENCODE) project.

Qu H, Fang X.

Genomics Proteomics Bioinformatics. 2013 Jun;11(3):135-41. doi: 10.1016/j.gpb.2013.05.001. Epub 2013 May 28. Review.

PMID:
23722115
[PubMed - indexed for MEDLINE]
Free Article
9.

ENCODE: A Sourcebook of Epigenomes and Chromatin Language.

Yavartanoo M, Choi JK.

Genomics Inform. 2013 Mar;11(1):2-6. doi: 10.5808/GI.2013.11.1.2. Epub 2013 Mar 31.

PMID:
23613676
[PubMed]
Free PMC Article
10.

The ENCODEdb portal: simplified access to ENCODE Consortium data.

Elnitski LL, Shah P, Moreland RT, Umayam L, Wolfsberg TG, Baxevanis AD.

Genome Res. 2007 Jun;17(6):954-9.

PMID:
17568011
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

ENCODE whole-genome data in the UCSC Genome Browser: update 2012.

Rosenbloom KR, Dreszer TR, Long JC, Malladi VS, Sloan CA, Raney BJ, Cline MS, Karolchik D, Barber GP, Clawson H, Diekhans M, Fujita PA, Goldman M, Gravell RC, Harte RA, Hinrichs AS, Kirkup VM, Kuhn RM, Learned K, Maddren M, Meyer LR, Pohl A, Rhead B, Wong MC, Zweig AS, Haussler D, Kent WJ.

Nucleic Acids Res. 2012 Jan;40(Database issue):D912-7. doi: 10.1093/nar/gkr1012. Epub 2011 Nov 9.

PMID:
22075998
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Identifying and characterizing regulatory sequences in the human genome with chromatin accessibility assays.

Sheffield NC, Furey TS.

Genes (Basel). 2012 Oct 15;3(4):651-70. doi: 10.3390/genes3040651.

PMID:
24705081
[PubMed]
Free PMC Article
13.

On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE.

Graur D, Zheng Y, Price N, Azevedo RB, Zufall RA, Elhaik E.

Genome Biol Evol. 2013;5(3):578-90. doi: 10.1093/gbe/evt028.

PMID:
23431001
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Translating the ENCyclopedia Of DNA Elements Project findings to the clinic: ENCODE's implications for eye disease.

Sanfilippo PG, Hewitt AW.

Clin Experiment Ophthalmol. 2014 Jan-Feb;42(1):78-83. doi: 10.1111/ceo.12150. Epub 2013 Jul 29.

PMID:
24433357
[PubMed - indexed for MEDLINE]
15.

Factorbook.org: a Wiki-based database for transcription factor-binding data generated by the ENCODE consortium.

Wang J, Zhuang J, Iyer S, Lin XY, Greven MC, Kim BH, Moore J, Pierce BG, Dong X, Virgil D, Birney E, Hung JH, Weng Z.

Nucleic Acids Res. 2013 Jan;41(Database issue):D171-6. doi: 10.1093/nar/gks1221. Epub 2012 Nov 29.

PMID:
23203885
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

ENCODE whole-genome data in the UCSC genome browser (2011 update).

Raney BJ, Cline MS, Rosenbloom KR, Dreszer TR, Learned K, Barber GP, Meyer LR, Sloan CA, Malladi VS, Roskin KM, Suh BB, Hinrichs AS, Clawson H, Zweig AS, Kirkup V, Fujita PA, Rhead B, Smith KE, Pohl A, Kuhn RM, Karolchik D, Haussler D, Kent WJ.

Nucleic Acids Res. 2011 Jan;39(Database issue):D871-5. doi: 10.1093/nar/gkq1017. Epub 2010 Oct 30.

PMID:
21037257
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Comparative Mouse Genomics Centers Consortium: the Mouse Genotype Database.

Wiley JC, Prattipati M, Lin CP, Ladiges W.

Mutat Res. 2006 Mar 20;595(1-2):137-44.

PMID:
16442569
[PubMed - indexed for MEDLINE]
18.

What does our genome encode?

Stamatoyannopoulos JA.

Genome Res. 2012 Sep;22(9):1602-11. doi: 10.1101/gr.146506.112.

PMID:
22955972
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Cracking the ENCODE: from transcription to therapeutics.

Mehta G, Jalan R, Mookerjee RP.

Hepatology. 2013 Jun;57(6):2532-5. doi: 10.1002/hep.26449.

PMID:
23609523
[PubMed - indexed for MEDLINE]
20.

The principle of recursive genome function.

Pellionisz AJ.

Cerebellum. 2008;7(3):348-59. doi: 10.1007/s12311-008-0035-y.

PMID:
18566877
[PubMed - indexed for MEDLINE]

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