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Results: 1 to 20 of 97

1.

CIDeR: multifactorial interaction networks in human diseases.

Lechner M, Höhn V, Brauner B, Dunger I, Fobo G, Frishman G, Montrone C, Kastenmüller G, Waegele B, Ruepp A.

Genome Biol. 2012 Jul 18;13(7):R62. doi: 10.1186/gb-2012-13-7-r62.

PMID:
22809392
[PubMed - in process]
Free PMC Article
2.

HoPaCI-DB: host-Pseudomonas and Coxiella interaction database.

Bleves S, Dunger I, Walter MC, Frangoulidis D, Kastenmüller G, Voulhoux R, Ruepp A.

Nucleic Acids Res. 2014 Jan;42(Database issue):D671-6. doi: 10.1093/nar/gkt925. Epub 2013 Oct 16.

PMID:
24137008
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

HSC-explorer: a curated database for hematopoietic stem cells.

Montrone C, Kokkaliaris KD, Loeffler D, Lechner M, Kastenmüller G, Schroeder T, Ruepp A.

PLoS One. 2013 Jul 30;8(7):e70348. doi: 10.1371/journal.pone.0070348. Print 2013.

PMID:
23936191
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

MIPS: curated databases and comprehensive secondary data resources in 2010.

Mewes HW, Ruepp A, Theis F, Rattei T, Walter M, Frishman D, Suhre K, Spannagl M, Mayer KF, Stümpflen V, Antonov A.

Nucleic Acids Res. 2011 Jan;39(Database issue):D220-4. doi: 10.1093/nar/gkq1157. Epub 2010 Nov 24.

PMID:
21109531
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis.

Merelli I, Viti F, Milanesi L.

BMC Bioinformatics. 2012;13 Suppl 14:S5. doi: 10.1186/1471-2105-13-S14-S5. Epub 2012 Sep 7.

PMID:
23095257
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

PhenomiR: a knowledgebase for microRNA expression in diseases and biological processes.

Ruepp A, Kowarsch A, Schmidl D, Buggenthin F, Brauner B, Dunger I, Fobo G, Frishman G, Montrone C, Theis FJ.

Genome Biol. 2010 Jan 20;11(1):R6. doi: 10.1186/gb-2010-11-1-r6.

PMID:
20089154
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

CORUM: the comprehensive resource of mammalian protein complexes--2009.

Ruepp A, Waegele B, Lechner M, Brauner B, Dunger-Kaltenbach I, Fobo G, Frishman G, Montrone C, Mewes HW.

Nucleic Acids Res. 2010 Jan;38(Database issue):D497-501. doi: 10.1093/nar/gkp914. Epub 2009 Nov 1.

PMID:
19884131
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

LiverAtlas: a unique integrated knowledge database for systems-level research of liver and hepatic disease.

Zhang Y, Yang C, Wang S, Chen T, Li M, Wang X, Li D, Wang K, Ma J, Wu S, Zhang X, Zhu Y, Wu J, He F.

Liver Int. 2013 Sep;33(8):1239-48. doi: 10.1111/liv.12173. Epub 2013 Apr 21.

PMID:
23601370
[PubMed - indexed for MEDLINE]
9.

CoryneRegNet 4.0 - A reference database for corynebacterial gene regulatory networks.

Baumbach J.

BMC Bioinformatics. 2007 Nov 6;8:429.

PMID:
17986320
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

CORUM: the comprehensive resource of mammalian protein complexes.

Ruepp A, Brauner B, Dunger-Kaltenbach I, Frishman G, Montrone C, Stransky M, Waegele B, Schmidt T, Doudieu ON, Stümpflen V, Mewes HW.

Nucleic Acids Res. 2008 Jan;36(Database issue):D646-50. Epub 2007 Oct 26.

PMID:
17965090
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context.

Ruepp A, Doudieu ON, van den Oever J, Brauner B, Dunger-Kaltenbach I, Fobo G, Frishman G, Montrone C, Skornia C, Wanka S, Rattei T, Pagel P, Riley L, Frishman D, Surmeli D, Tetko IV, Oesterheld M, Stümpflen V, Mewes HW.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D568-71.

PMID:
16381934
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Negatome 2.0: a database of non-interacting proteins derived by literature mining, manual annotation and protein structure analysis.

Blohm P, Frishman G, Smialowski P, Goebels F, Wachinger B, Ruepp A, Frishman D.

Nucleic Acids Res. 2014 Jan;42(Database issue):D396-400. doi: 10.1093/nar/gkt1079. Epub 2013 Nov 8.

PMID:
24214996
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

MIPS: analysis and annotation of proteins from whole genomes in 2005.

Mewes HW, Frishman D, Mayer KF, Münsterkötter M, Noubibou O, Pagel P, Rattei T, Oesterheld M, Ruepp A, Stümpflen V.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D169-72.

PMID:
16381839
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.

PMID:
17445272
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

InnateDB: facilitating systems-level analyses of the mammalian innate immune response.

Lynn DJ, Winsor GL, Chan C, Richard N, Laird MR, Barsky A, Gardy JL, Roche FM, Chan TH, Shah N, Lo R, Naseer M, Que J, Yau M, Acab M, Tulpan D, Whiteside MD, Chikatamarla A, Mah B, Munzner T, Hokamp K, Hancock RE, Brinkman FS.

Mol Syst Biol. 2008;4:218. doi: 10.1038/msb.2008.55. Epub 2008 Sep 2.

PMID:
18766178
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Knowledge-Based Analysis of Protein Interaction Networks in Neurodegenerative Diseases.

Kanehisa M, Limviphuvadh V, Tanabe M.

In: Alzate O, editor. Neuroproteomics. Boca Raton (FL): CRC Press; 2010. Chapter 9.

PMID:
21882442
[PubMed]
Books & Documents
17.

An evaluation of human protein-protein interaction data in the public domain.

Mathivanan S, Periaswamy B, Gandhi TK, Kandasamy K, Suresh S, Mohmood R, Ramachandra YL, Pandey A.

BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S19.

PMID:
17254303
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

R spider: a network-based analysis of gene lists by combining signaling and metabolic pathways from Reactome and KEGG databases.

Antonov AV, Schmidt EE, Dietmann S, Krestyaninova M, Hermjakob H.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W78-83. doi: 10.1093/nar/gkq482. Epub 2010 Jun 2.

PMID:
20519200
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

The Negatome database: a reference set of non-interacting protein pairs.

Smialowski P, Pagel P, Wong P, Brauner B, Dunger I, Fobo G, Frishman G, Montrone C, Rattei T, Frishman D, Ruepp A.

Nucleic Acids Res. 2010 Jan;38(Database issue):D540-4. doi: 10.1093/nar/gkp1026. Epub 2009 Nov 17.

PMID:
19920129
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

MIPS: analysis and annotation of proteins from whole genomes.

Mewes HW, Amid C, Arnold R, Frishman D, Güldener U, Mannhaupt G, Münsterkötter M, Pagel P, Strack N, Stümpflen V, Warfsmann J, Ruepp A.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D41-4.

PMID:
14681354
[PubMed - indexed for MEDLINE]
Free PMC Article

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