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Results: 1 to 20 of 85

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1.

Structure-based classification and ontology in chemistry.

Hastings J, Magka D, Batchelor C, Duan L, Stevens R, Ennis M, Steinbeck C.

J Cheminform. 2012 Apr 5;4:8. doi: 10.1186/1758-2946-4-8.

2.

Automated compound classification using a chemical ontology.

Bobach C, Böhme T, Laube U, Püschel A, Weber L.

J Cheminform. 2012 Dec 29;4(1):40. doi: 10.1186/1758-2946-4-40.

3.

A rule-based ontological framework for the classification of molecules.

Magka D, Krötzsch M, Horrocks I.

J Biomed Semantics. 2014 Apr 15;5:17. doi: 10.1186/2041-1480-5-17. eCollection 2014.

4.

The chemical information ontology: provenance and disambiguation for chemical data on the biological semantic web.

Hastings J, Chepelev L, Willighagen E, Adams N, Steinbeck C, Dumontier M.

PLoS One. 2011;6(10):e25513. doi: 10.1371/journal.pone.0025513. Epub 2011 Oct 3.

5.

Self-organizing ontology of biochemically relevant small molecules.

Chepelev LL, Hastings J, Ennis M, Steinbeck C, Dumontier M.

BMC Bioinformatics. 2012 Jan 6;13:3. doi: 10.1186/1471-2105-13-3.

6.

The ChEBI reference database and ontology for biologically relevant chemistry: enhancements for 2013.

Hastings J, de Matos P, Dekker A, Ennis M, Harsha B, Kale N, Muthukrishnan V, Owen G, Turner S, Williams M, Steinbeck C.

Nucleic Acids Res. 2013 Jan;41(Database issue):D456-63. doi: 10.1093/nar/gks1146. Epub 2012 Nov 24.

7.

Dovetailing biology and chemistry: integrating the Gene Ontology with the ChEBI chemical ontology.

Hill DP, Adams N, Bada M, Batchelor C, Berardini TZ, Dietze H, Drabkin HJ, Ennis M, Foulger RE, Harris MA, Hastings J, Kale NS, de Matos P, Mungall CJ, Owen G, Roncaglia P, Steinbeck C, Turner S, Lomax J.

BMC Genomics. 2013 Jul 29;14:513. doi: 10.1186/1471-2164-14-513.

8.

Semantic Web integration of Cheminformatics resources with the SADI framework.

Chepelev LL, Dumontier M.

J Cheminform. 2011 May 16;3:16. doi: 10.1186/1758-2946-3-16.

9.

Advances in cheminformatics methodologies and infrastructure to support the data mining of large, heterogeneous chemical datasets.

Guha R, Gilbert K, Fox G, Pierce M, Wild D, Yuan H.

Curr Comput Aided Drug Des. 2010 Mar;6(1):50-67. Review.

PMID:
20370695
10.

Prototype semantic infrastructure for automated small molecule classification and annotation in lipidomics.

Chepelev LL, Riazanov A, Kouznetsov A, Low HS, Dumontier M, Baker CJ.

BMC Bioinformatics. 2011 Jul 26;12:303. doi: 10.1186/1471-2105-12-303.

11.

Proposed actions are no actions: re-modeling an ontology design pattern with a realist top-level ontology.

Seddig-Raufie D, Jansen L, Schober D, Boeker M, Grewe N, Schulz S.

J Biomed Semantics. 2012 Sep 21;3 Suppl 2:S2. doi: 10.1186/2041-1480-3-S2-S2. Epub 2012 Sep 21.

12.

BiNChE: A web tool and library for chemical enrichment analysis based on the ChEBI ontology.

Moreno P, Beisken S, Harsha B, Muthukrishnan V, Tudose I, Dekker A, Dornfeldt S, Taruttis F, Grosse I, Hastings J, Neumann S, Steinbeck C.

BMC Bioinformatics. 2015 Feb 21;16(1):56. doi: 10.1186/s12859-015-0486-3.

13.

The ontology-based answers (OBA) service: a connector for embedded usage of ontologies in applications.

Dönitz J, Wingender E.

Front Genet. 2012 Oct 5;3:197. doi: 10.3389/fgene.2012.00197. eCollection 2012.

14.

Computational tools for the modern andrologist.

Niederberger C.

J Androl. 1996 Sep-Oct;17(5):462-6. Review.

PMID:
8957688
15.

Ontology driven modeling for the knowledge of genetic susceptibility to disease.

Lin Y, Sakamoto N.

Kobe J Med Sci. 2009 Apr 30;54(6):E290-303.

16.

GalenOWL: Ontology-based drug recommendations discovery.

Doulaverakis C, Nikolaidis G, Kleontas A, Kompatsiaris I.

J Biomed Semantics. 2012 Dec 20;3(1):14. doi: 10.1186/2041-1480-3-14.

17.

SVM-Fold: a tool for discriminative multi-class protein fold and superfamily recognition.

Melvin I, Ie E, Kuang R, Weston J, Stafford WN, Leslie C.

BMC Bioinformatics. 2007 May 22;8 Suppl 4:S2.

18.

Turning text into research networks: information retrieval and computational ontologies in the creation of scientific databases.

Ceci F, Pietrobon R, Gonçalves AL.

PLoS One. 2012;7(1):e27499. doi: 10.1371/journal.pone.0027499. Epub 2012 Jan 3.

19.

Ontology driven modeling for the knowledge of genetic susceptibility to disease.

Lin Y, Sakamoto N.

Kobe J Med Sci. 2009 May 12;55(3):E53-66.

20.

Fast model-based protein homology detection without alignment.

Hochreiter S, Heusel M, Obermayer K.

Bioinformatics. 2007 Jul 15;23(14):1728-36. Epub 2007 May 8.

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