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Results: 1 to 20 of 167

1.

Genome-wide analysis of plant nat-siRNAs reveals insights into their distribution, biogenesis and function.

Zhang X, Xia J, Lii YE, Barrera-Figueroa BE, Zhou X, Gao S, Lu L, Niu D, Chen Z, Leung C, Wong T, Zhang H, Guo J, Li Y, Liu R, Liang W, Zhu JK, Zhang W, Jin H.

Genome Biol. 2012;13(3):R20. doi: 10.1186/gb-2012-13-3-r20.

PMID:
22439910
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Small RNAs and the regulation of cis-natural antisense transcripts in Arabidopsis.

Jin H, Vacic V, Girke T, Lonardi S, Zhu JK.

BMC Mol Biol. 2008 Jan 14;9:6. doi: 10.1186/1471-2199-9-6.

PMID:
18194570
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Strand-specific RNA-seq reveals widespread occurrence of novel cis-natural antisense transcripts in rice.

Lu T, Zhu C, Lu G, Guo Y, Zhou Y, Zhang Z, Zhao Y, Li W, Lu Y, Tang W, Feng Q, Han B.

BMC Genomics. 2012 Dec 22;13:721. doi: 10.1186/1471-2164-13-721.

PMID:
23259405
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa.

Zhou X, Sunkar R, Jin H, Zhu JK, Zhang W.

Genome Res. 2009 Jan;19(1):70-8. doi: 10.1101/gr.084806.108. Epub 2008 Oct 29.

PMID:
18971307
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data.

Li S, Liberman LM, Mukherjee N, Benfey PN, Ohler U.

Genome Res. 2013 Oct;23(10):1730-9. doi: 10.1101/gr.149310.112. Epub 2013 Jul 1.

PMID:
23816784
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana.

Wang XJ, Gaasterland T, Chua NH.

Genome Biol. 2005;6(4):R30. Epub 2005 Mar 15.

PMID:
15833117
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Role of RNA polymerase IV in plant small RNA metabolism.

Zhang X, Henderson IR, Lu C, Green PJ, Jacobsen SE.

Proc Natl Acad Sci U S A. 2007 Mar 13;104(11):4536-41. Epub 2007 Mar 5.

PMID:
17360559
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Small RNAs originated from pseudogenes: cis- or trans-acting?

Guo X, Zhang Z, Gerstein MB, Zheng D.

PLoS Comput Biol. 2009 Jul;5(7):e1000449. doi: 10.1371/journal.pcbi.1000449. Epub 2009 Jul 31.

PMID:
19649160
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Primary and secondary siRNAs in geminivirus-induced gene silencing.

Aregger M, Borah BK, Seguin J, Rajeswaran R, Gubaeva EG, Zvereva AS, Windels D, Vazquez F, Blevins T, Farinelli L, Pooggin MM.

PLoS Pathog. 2012 Sep;8(9):e1002941. doi: 10.1371/journal.ppat.1002941. Epub 2012 Sep 27.

PMID:
23028332
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Small RNAs in angiosperms: sequence characteristics, distribution and generation.

Chen D, Meng Y, Ma X, Mao C, Bai Y, Cao J, Gu H, Wu P, Chen M.

Bioinformatics. 2010 Jun 1;26(11):1391-4. doi: 10.1093/bioinformatics/btq150. Epub 2010 Apr 8.

PMID:
20378553
[PubMed - indexed for MEDLINE]
Free Article
11.

Mechanisms of small RNA generation from cis-NATs in response to environmental and developmental cues.

Zhang X, Lii Y, Wu Z, Polishko A, Zhang H, Chinnusamy V, Lonardi S, Zhu JK, Liu R, Jin H.

Mol Plant. 2013 May;6(3):704-15. doi: 10.1093/mp/sst051. Epub 2013 Mar 15. Review.

PMID:
23505223
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Global analysis of cis-natural antisense transcripts and their heat-responsive nat-siRNAs in Brassica rapa.

Yu X, Yang J, Li X, Liu X, Sun C, Wu F, He Y.

BMC Plant Biol. 2013 Dec 10;13:208. doi: 10.1186/1471-2229-13-208.

PMID:
24320882
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Transitivity in Arabidopsis can be primed, requires the redundant action of the antiviral Dicer-like 4 and Dicer-like 2, and is compromised by viral-encoded suppressor proteins.

Moissiard G, Parizotto EA, Himber C, Voinnet O.

RNA. 2007 Aug;13(8):1268-78. Epub 2007 Jun 25.

PMID:
17592042
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Arabidopsis small RNAs and their targets during cyst nematode parasitism.

Hewezi T, Howe P, Maier TR, Baum TJ.

Mol Plant Microbe Interact. 2008 Dec;21(12):1622-34. doi: 10.1094/MPMI-21-12-1622.

PMID:
18986258
[PubMed - indexed for MEDLINE]
Free Article
15.

Structural and genetic requirements for the biogenesis of tobacco rattle virus-derived small interfering RNAs.

Donaire L, Barajas D, Martínez-García B, Martínez-Priego L, Pagán I, Llave C.

J Virol. 2008 Jun;82(11):5167-77. doi: 10.1128/JVI.00272-08. Epub 2008 Mar 19.

PMID:
18353962
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Prediction and identification of natural antisense transcripts and their small RNAs in soybean (Glycine max).

Zheng H, Qiyan J, Zhiyong N, Hui Z.

BMC Genomics. 2013 Apr 24;14:280. doi: 10.1186/1471-2164-14-280.

PMID:
23617936
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Roles of dicer-like and argonaute proteins in TAS-derived small interfering RNA-triggered DNA methylation.

Wu L, Mao L, Qi Y.

Plant Physiol. 2012 Oct;160(2):990-9. doi: 10.1104/pp.112.200279. Epub 2012 Jul 30.

PMID:
22846193
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

A plant RNA virus suppresses RNA silencing through viral RNA replication.

Takeda A, Tsukuda M, Mizumoto H, Okamoto K, Kaido M, Mise K, Okuno T.

EMBO J. 2005 Sep 7;24(17):3147-57. Epub 2005 Aug 11.

PMID:
16096641
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis.

Mosher RA, Melnyk CW, Kelly KA, Dunn RM, Studholme DJ, Baulcombe DC.

Nature. 2009 Jul 9;460(7252):283-6. doi: 10.1038/nature08084. Epub 2009 Jun 3.

PMID:
19494814
[PubMed - indexed for MEDLINE]
20.

RNAi-mediated viral immunity requires amplification of virus-derived siRNAs in Arabidopsis thaliana.

Wang XB, Wu Q, Ito T, Cillo F, Li WX, Chen X, Yu JL, Ding SW.

Proc Natl Acad Sci U S A. 2010 Jan 5;107(1):484-9. doi: 10.1073/pnas.0904086107. Epub 2009 Dec 4.

PMID:
19966292
[PubMed - indexed for MEDLINE]
Free PMC Article

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