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Items: 1 to 20 of 85


CpGPAP: CpG island predictor analysis platform.

Chuang LY, Yang CH, Lin MC, Yang CH.

BMC Genet. 2012 Mar 2;13:13. doi: 10.1186/1471-2156-13-13.


Particle swarm optimization with reinforcement learning for the prediction of CpG islands in the human genome.

Chuang LY, Huang HC, Lin MC, Yang CH.

PLoS One. 2011;6(6):e21036. doi: 10.1371/journal.pone.0021036. Epub 2011 Jun 28.


Linking the epigenome to the genome: correlation of different features to DNA methylation of CpG islands.

Wrzodek C, Büchel F, Hinselmann G, Eichner J, Mittag F, Zell A.

PLoS One. 2012;7(4):e35327. doi: 10.1371/journal.pone.0035327. Epub 2012 Apr 30.


PPO: predictor for prokaryotic operons.

Chuang LY, Tsai JH, Yang CH.

Bioinformatics. 2010 Dec 15;26(24):3127-8. doi: 10.1093/bioinformatics/btq601. Epub 2010 Oct 28.


The CpG island searcher: a new WWW resource.

Takai D, Jones PA.

In Silico Biol. 2003;3(3):235-40.


Prediction of CpG-island function: CpG clustering vs. sliding-window methods.

Hackenberg M, Barturen G, Carpena P, Luque-Escamilla PL, Previti C, Oliver JL.

BMC Genomics. 2010 May 26;11:327. doi: 10.1186/1471-2164-11-327.


PRIMEGENS-v2: genome-wide primer design for analyzing DNA methylation patterns of CpG islands.

Srivastava GP, Guo J, Shi H, Xu D.

Bioinformatics. 2008 Sep 1;24(17):1837-42. doi: 10.1093/bioinformatics/btn320. Epub 2008 Jun 25.


CpGIMethPred: computational model for predicting methylation status of CpG islands in human genome.

Zheng H, Wu H, Li J, Jiang SW.

BMC Med Genomics. 2013;6 Suppl 1:S13. doi: 10.1186/1755-8794-6-S1-S13. Epub 2013 Jan 23.


CpGcluster: a distance-based algorithm for CpG-island detection.

Hackenberg M, Previti C, Luque-Escamilla PL, Carpena P, Martínez-Aroza J, Oliver JL.

BMC Bioinformatics. 2006 Oct 12;7:446.


Predicting methylation status of CpG islands in the human brain.

Fang F, Fan S, Zhang X, Zhang MQ.

Bioinformatics. 2006 Sep 15;22(18):2204-9. Epub 2006 Jul 12.


CpG island mapping by epigenome prediction.

Bock C, Walter J, Paulsen M, Lengauer T.

PLoS Comput Biol. 2007 Jun;3(6):e110. Epub 2007 May 2.


An evaluation of new criteria for CpG islands in the human genome as gene markers.

Wang Y, Leung FC.

Bioinformatics. 2004 May 1;20(7):1170-7. Epub 2004 Feb 5.


Correlating CpG islands, motifs, and sequence variants in human chromosome 21.

Spontaneo L, Cercone N.

BMC Genomics. 2011;12 Suppl 2:S10. doi: 10.1186/1471-2164-12-S2-S10. Epub 2011 Jul 27.


QUMA: quantification tool for methylation analysis.

Kumaki Y, Oda M, Okano M.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W170-5. doi: 10.1093/nar/gkn294. Epub 2008 May 16.


IslandViewer: an integrated interface for computational identification and visualization of genomic islands.

Langille MG, Brinkman FS.

Bioinformatics. 2009 Mar 1;25(5):664-5. doi: 10.1093/bioinformatics/btp030. Epub 2009 Jan 16.


GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group.

Lee TY, Chang WC, Hsu JB, Chang TH, Shien DM.

BMC Genomics. 2012;13 Suppl 1:S3. doi: 10.1186/1471-2164-13-S1-S3. Epub 2012 Jan 17.


GIST: Genomic island suite of tools for predicting genomic islands in genomic sequences.

Hasan MS, Liu Q, Wang H, Fazekas J, Chen B, Che D.

Bioinformation. 2012;8(4):203-5. doi: 10.6026/97320630008203. Epub 2012 Feb 28.

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