Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Results: 1 to 20 of 103

1.

Dissecting the regulatory architecture of gene expression QTLs.

Gaffney DJ, Veyrieras JB, Degner JF, Pique-Regi R, Pai AA, Crawford GE, Stephens M, Gilad Y, Pritchard JK.

Genome Biol. 2012 Jan 31;13(1):R7. doi: 10.1186/gb-2012-13-1-r7.

PMID:
22293038
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Integrative modeling of eQTLs and cis-regulatory elements suggests mechanisms underlying cell type specificity of eQTLs.

Brown CD, Mangravite LM, Engelhardt BE.

PLoS Genet. 2013;9(8):e1003649. doi: 10.1371/journal.pgen.1003649. Epub 2013 Aug 1.

PMID:
23935528
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

DNase‚ÄČI sensitivity QTLs are a major determinant of human expression variation.

Degner JF, Pai AA, Pique-Regi R, Veyrieras JB, Gaffney DJ, Pickrell JK, De Leon S, Michelini K, Lewellen N, Crawford GE, Stephens M, Gilad Y, Pritchard JK.

Nature. 2012 Feb 5;482(7385):390-4. doi: 10.1038/nature10808.

PMID:
22307276
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Patterns of cis regulatory variation in diverse human populations.

Stranger BE, Montgomery SB, Dimas AS, Parts L, Stegle O, Ingle CE, Sekowska M, Smith GD, Evans D, Gutierrez-Arcelus M, Price A, Raj T, Nisbett J, Nica AC, Beazley C, Durbin R, Deloukas P, Dermitzakis ET.

PLoS Genet. 2012;8(4):e1002639. doi: 10.1371/journal.pgen.1002639. Epub 2012 Apr 19.

PMID:
22532805
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Cis-regulatory variations: a study of SNPs around genes showing cis-linkage in segregating mouse populations.

GuhaThakurta D, Xie T, Anand M, Edwards SW, Li G, Wang SS, Schadt EE.

BMC Genomics. 2006 Sep 15;7:235.

PMID:
16978413
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

High-resolution mapping of expression-QTLs yields insight into human gene regulation.

Veyrieras JB, Kudaravalli S, Kim SY, Dermitzakis ET, Gilad Y, Stephens M, Pritchard JK.

PLoS Genet. 2008 Oct;4(10):e1000214. doi: 10.1371/journal.pgen.1000214. Epub 2008 Oct 10.

PMID:
18846210
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Maps of open chromatin highlight cell type-restricted patterns of regulatory sequence variation at hematological trait loci.

Paul DS, Albers CA, Rendon A, Voss K, Stephens J; HaemGen Consortium, van der Harst P, Chambers JC, Soranzo N, Ouwehand WH, Deloukas P.

Genome Res. 2013 Jul;23(7):1130-41. doi: 10.1101/gr.155127.113. Epub 2013 Apr 9.

PMID:
23570689
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Rare and common regulatory variation in population-scale sequenced human genomes.

Montgomery SB, Lappalainen T, Gutierrez-Arcelus M, Dermitzakis ET.

PLoS Genet. 2011 Jul;7(7):e1002144. doi: 10.1371/journal.pgen.1002144. Epub 2011 Jul 21.

PMID:
21811411
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Using functional annotation for the empirical determination of Bayes Factors for genome-wide association study analysis.

Knight J, Barnes MR, Breen G, Weale ME.

PLoS One. 2011 Apr 27;6(4):e14808. doi: 10.1371/journal.pone.0014808.

PMID:
21556132
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Transcription factor and chromatin features predict genes associated with eQTLs.

Wang D, Rendon A, Wernisch L.

Nucleic Acids Res. 2013 Feb 1;41(3):1450-63. doi: 10.1093/nar/gks1339. Epub 2012 Dec 28.

PMID:
23275551
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

On the identification of potential regulatory variants within genome wide association candidate SNP sets.

Chen CY, Chang IS, Hsiung CA, Wasserman WW.

BMC Med Genomics. 2014 Jun 11;7:34. doi: 10.1186/1755-8794-7-34.

PMID:
24920305
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

An integrated encyclopedia of DNA elements in the human genome.

ENCODE Project Consortium.

Nature. 2012 Sep 6;489(7414):57-74. doi: 10.1038/nature11247.

PMID:
22955616
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines.

Bell JT, Pai AA, Pickrell JK, Gaffney DJ, Pique-Regi R, Degner JF, Gilad Y, Pritchard JK.

Genome Biol. 2011;12(1):R10. doi: 10.1186/gb-2011-12-1-r10. Epub 2011 Jan 20. Erratum in: Genome Biol. 2011;12(6):405.

PMID:
21251332
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Identification, replication, and functional fine-mapping of expression quantitative trait loci in primary human liver tissue.

Innocenti F, Cooper GM, Stanaway IB, Gamazon ER, Smith JD, Mirkov S, Ramirez J, Liu W, Lin YS, Moloney C, Aldred SF, Trinklein ND, Schuetz E, Nickerson DA, Thummel KE, Rieder MJ, Rettie AE, Ratain MJ, Cox NJ, Brown CD.

PLoS Genet. 2011 May;7(5):e1002078. doi: 10.1371/journal.pgen.1002078. Epub 2011 May 26.

PMID:
21637794
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Genetic landscape of open chromatin in yeast.

Lee K, Kim SC, Jung I, Kim K, Seo J, Lee HS, Bogu GK, Kim D, Lee S, Lee B, Choi JK.

PLoS Genet. 2013;9(2):e1003229. doi: 10.1371/journal.pgen.1003229. Epub 2013 Feb 7.

PMID:
23408895
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The use of genome-wide eQTL associations in lymphoblastoid cell lines to identify novel genetic pathways involved in complex traits.

Min JL, Taylor JM, Richards JB, Watts T, Pettersson FH, Broxholme J, Ahmadi KR, Surdulescu GL, Lowy E, Gieger C, Newton-Cheh C, Perola M, Soranzo N, Surakka I, Lindgren CM, Ragoussis J, Morris AP, Cardon LR, Spector TD, Zondervan KT.

PLoS One. 2011;6(7):e22070. doi: 10.1371/journal.pone.0022070. Epub 2011 Jul 15.

PMID:
21789213
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Mapping of gene expression reveals CYP27A1 as a susceptibility gene for sporadic ALS.

Diekstra FP, Saris CG, van Rheenen W, Franke L, Jansen RC, van Es MA, van Vught PW, Blauw HM, Groen EJ, Horvath S, Estrada K, Rivadeneira F, Hofman A, Uitterlinden AG, Robberecht W, Andersen PM, Melki J, Meininger V, Hardiman O, Landers JE, Brown RH Jr, Shatunov A, Shaw CE, Leigh PN, Al-Chalabi A, Ophoff RA, van den Berg LH, Veldink JH.

PLoS One. 2012;7(4):e35333. doi: 10.1371/journal.pone.0035333. Epub 2012 Apr 11.

PMID:
22509407
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Higher-order chromatin domains link eQTLs with the expression of far-away genes.

Duggal G, Wang H, Kingsford C.

Nucleic Acids Res. 2014 Jan;42(1):87-96. doi: 10.1093/nar/gkt857. Epub 2013 Oct 1.

PMID:
24089144
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection.

Shibata Y, Sheffield NC, Fedrigo O, Babbitt CC, Wortham M, Tewari AK, London D, Song L, Lee BK, Iyer VR, Parker SC, Margulies EH, Wray GA, Furey TS, Crawford GE.

PLoS Genet. 2012 Jun;8(6):e1002789. doi: 10.1371/journal.pgen.1002789. Epub 2012 Jun 28.

PMID:
22761590
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions.

Sheffield NC, Thurman RE, Song L, Safi A, Stamatoyannopoulos JA, Lenhard B, Crawford GE, Furey TS.

Genome Res. 2013 May;23(5):777-88. doi: 10.1101/gr.152140.112. Epub 2013 Mar 12.

PMID:
23482648
[PubMed - indexed for MEDLINE]
Free PMC Article

Display Settings:

Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

Write to the Help Desk