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Results: 1 to 20 of 114

1.

MetaMerge: scaling up genome-scale metabolic reconstructions with application to Mycobacterium tuberculosis.

Chindelevitch L, Stanley S, Hung D, Regev A, Berger B.

Genome Biol. 2012 Jan 31;13(1):r6. doi: 10.1186/gb-2012-13-1-r6.

PMID:
22292986
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Identification of functional differences in metabolic networks using comparative genomics and constraint-based models.

Hamilton JJ, Reed JL.

PLoS One. 2012;7(4):e34670. doi: 10.1371/journal.pone.0034670. Epub 2012 Apr 16.

PMID:
22666308
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis.

Chandrasekaran S, Price ND.

Proc Natl Acad Sci U S A. 2010 Oct 12;107(41):17845-50. doi: 10.1073/pnas.1005139107. Epub 2010 Sep 27.

PMID:
20876091
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Interpreting expression data with metabolic flux models: predicting Mycobacterium tuberculosis mycolic acid production.

Colijn C, Brandes A, Zucker J, Lun DS, Weiner B, Farhat MR, Cheng TY, Moody DB, Murray M, Galagan JE.

PLoS Comput Biol. 2009 Aug;5(8):e1000489. doi: 10.1371/journal.pcbi.1000489. Epub 2009 Aug 28.

PMID:
19714220
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Reconciliation of genome-scale metabolic reconstructions for comparative systems analysis.

Oberhardt MA, Puchałka J, Martins dos Santos VA, Papin JA.

PLoS Comput Biol. 2011 Mar;7(3):e1001116. doi: 10.1371/journal.pcbi.1001116. Epub 2011 Mar 31.

PMID:
21483480
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions.

Bordbar A, Lewis NE, Schellenberger J, Palsson BØ, Jamshidi N.

Mol Syst Biol. 2010 Oct 19;6:422. doi: 10.1038/msb.2010.68.

PMID:
20959820
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

GSMN-TB: a web-based genome-scale network model of Mycobacterium tuberculosis metabolism.

Beste DJ, Hooper T, Stewart G, Bonde B, Avignone-Rossa C, Bushell ME, Wheeler P, Klamt S, Kierzek AM, McFadden J.

Genome Biol. 2007;8(5):R89.

PMID:
17521419
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Development and analysis of an in vivo-compatible metabolic network of Mycobacterium tuberculosis.

Fang X, Wallqvist A, Reifman J.

BMC Syst Biol. 2010 Nov 23;4:160. doi: 10.1186/1752-0509-4-160.

PMID:
21092312
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Metabolite-centric approaches for the discovery of antibacterials using genome-scale metabolic networks.

Kim TY, Kim HU, Lee SY.

Metab Eng. 2010 Mar;12(2):105-11. doi: 10.1016/j.ymben.2009.05.004. Epub 2009 May 28.

PMID:
19481614
[PubMed - indexed for MEDLINE]
10.

iAK692: a genome-scale metabolic model of Spirulina platensis C1.

Klanchui A, Khannapho C, Phodee A, Cheevadhanarak S, Meechai A.

BMC Syst Biol. 2012 Jun 15;6:71. doi: 10.1186/1752-0509-6-71.

PMID:
22703714
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1.

Sigurdsson MI, Jamshidi N, Steingrimsson E, Thiele I, Palsson BØ.

BMC Syst Biol. 2010 Oct 19;4:140. doi: 10.1186/1752-0509-4-140.

PMID:
20959003
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Social networks to biological networks: systems biology of Mycobacterium tuberculosis.

Vashisht R, Bhardwaj A, Osdd Consortium, Brahmachari SK.

Mol Biosyst. 2013 Jul;9(7):1584-93. doi: 10.1039/c3mb25546h. Epub 2013 Apr 29. Review.

PMID:
23629487
[PubMed - indexed for MEDLINE]
13.

A multi-level multi-scale approach to study essential genes in Mycobacterium tuberculosis.

Ghosh S, Baloni P, Mukherjee S, Anand P, Chandra N.

BMC Syst Biol. 2013 Dec 5;7:132. doi: 10.1186/1752-0509-7-132.

PMID:
24308365
[PubMed - indexed for MEDLINE]
Free Article
14.

High-throughput screen of essential gene modules in Mycobacterium tuberculosis: a bibliometric approach.

Xu G, Liu B, Wang F, Wei C, Zhang Y, Sheng J, Wang G, Li F.

BMC Infect Dis. 2013 May 20;13:227. doi: 10.1186/1471-2334-13-227.

PMID:
23687949
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Can the whole be less than the sum of its parts? Pathway analysis in genome-scale metabolic networks using elementary flux patterns.

Kaleta C, de Figueiredo LF, Schuster S.

Genome Res. 2009 Oct;19(10):1872-83. doi: 10.1101/gr.090639.108. Epub 2009 Jun 18.

PMID:
19541909
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Genome-scale model for Clostridium acetobutylicum: Part I. Metabolic network resolution and analysis.

Senger RS, Papoutsakis ET.

Biotechnol Bioeng. 2008 Dec 1;101(5):1036-52. doi: 10.1002/bit.22010.

PMID:
18767192
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

F2C2: a fast tool for the computation of flux coupling in genome-scale metabolic networks.

Larhlimi A, David L, Selbig J, Bockmayr A.

BMC Bioinformatics. 2012 Apr 23;13:57. doi: 10.1186/1471-2105-13-57.

PMID:
22524245
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Toward the automated generation of genome-scale metabolic networks in the SEED.

DeJongh M, Formsma K, Boillot P, Gould J, Rycenga M, Best A.

BMC Bioinformatics. 2007 Apr 26;8:139.

PMID:
17462086
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Flux coupling analysis of metabolic networks is sensitive to missing reactions.

Marashi SA, Bockmayr A.

Biosystems. 2011 Jan;103(1):57-66. doi: 10.1016/j.biosystems.2010.09.011. Epub 2010 Oct 1.

PMID:
20888889
[PubMed - indexed for MEDLINE]
20.

Network-based scoring system for genome-scale metabolic reconstructions.

Serrano MÁ, Sagués F.

BMC Syst Biol. 2011 May 19;5:76. doi: 10.1186/1752-0509-5-76.

PMID:
21595941
[PubMed - indexed for MEDLINE]
Free PMC Article

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