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Results: 1 to 20 of 103

1.

The relationship between proteome size, structural disorder and organism complexity.

Schad E, Tompa P, Hegyi H.

Genome Biol. 2011 Dec 19;12(12):R120. doi: 10.1186/gb-2011-12-12-r120.

PMID:
22182830
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Orderly order in protein intrinsic disorder distribution: disorder in 3500 proteomes from viruses and the three domains of life.

Xue B, Dunker AK, Uversky VN.

J Biomol Struct Dyn. 2012;30(2):137-49. doi: 10.1080/07391102.2012.675145.

PMID:
22702725
[PubMed - indexed for MEDLINE]
3.

The unfoldomics decade: an update on intrinsically disordered proteins.

Dunker AK, Oldfield CJ, Meng J, Romero P, Yang JY, Chen JW, Vacic V, Obradovic Z, Uversky VN.

BMC Genomics. 2008 Sep 16;9 Suppl 2:S1. doi: 10.1186/1471-2164-9-S2-S1.

PMID:
18831774
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Projection of gene-protein networks to the functional space of the proteome and its application to analysis of organism complexity.

Kanapin AA, Mulder N, Kuznetsov VA.

BMC Genomics. 2010 Feb 10;11 Suppl 1:S4. doi: 10.1186/1471-2164-11-S1-S4.

PMID:
20158875
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Bioinformatics analysis of disordered proteins in prokaryotes.

Pavlović-Lažetić GM, Mitić NS, Kovačević JJ, Obradović Z, Malkov SN, Beljanski MV.

BMC Bioinformatics. 2011 Mar 2;12:66. doi: 10.1186/1471-2105-12-66.

PMID:
21366926
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Distinct types of disorder in the human proteome: functional implications for alternative splicing.

Colak R, Kim T, Michaut M, Sun M, Irimia M, Bellay J, Myers CL, Blencowe BJ, Kim PM.

PLoS Comput Biol. 2013 Apr;9(4):e1003030. doi: 10.1371/journal.pcbi.1003030. Epub 2013 Apr 25.

PMID:
23633940
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Intrinsic disorder in pathogenic and non-pathogenic microbes: discovering and analyzing the unfoldomes of early-branching eukaryotes.

Mohan A, Sullivan WJ Jr, Radivojac P, Dunker AK, Uversky VN.

Mol Biosyst. 2008 Apr;4(4):328-40. doi: 10.1039/b719168e. Epub 2008 Feb 21.

PMID:
18354786
[PubMed - indexed for MEDLINE]
8.

Structural disorder in eukaryotes.

Pancsa R, Tompa P.

PLoS One. 2012;7(4):e34687. doi: 10.1371/journal.pone.0034687. Epub 2012 Apr 5.

PMID:
22496841
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Binary classification of protein molecules into intrinsically disordered and ordered segments.

Fukuchi S, Hosoda K, Homma K, Gojobori T, Nishikawa K.

BMC Struct Biol. 2011 Jun 22;11:29. doi: 10.1186/1472-6807-11-29.

PMID:
21693062
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Impacts of protein-protein interaction domains on organism and network complexity.

Xia K, Fu Z, Hou L, Han JD.

Genome Res. 2008 Sep;18(9):1500-8. doi: 10.1101/gr.068130.107. Epub 2008 Aug 7.

PMID:
18687879
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Correcting for differential transcript coverage reveals a strong relationship between alternative splicing and organism complexity.

Chen L, Bush SJ, Tovar-Corona JM, Castillo-Morales A, Urrutia AO.

Mol Biol Evol. 2014 Jun;31(6):1402-13. doi: 10.1093/molbev/msu083. Epub 2014 Mar 27.

PMID:
24682283
[PubMed - in process]
Free PMC Article
12.

Natively unstructured loops differ from other loops.

Schlessinger A, Liu J, Rost B.

PLoS Comput Biol. 2007 Jul;3(7):e140.

PMID:
17658943
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Systematic analysis of human kinase genes: a large number of genes and alternative splicing events result in functional and structural diversity.

Milanesi L, Petrillo M, Sepe L, Boccia A, D'Agostino N, Passamano M, Di Nardo S, Tasco G, Casadio R, Paolella G.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S20.

PMID:
16351747
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome.

Severing EI, van Dijk AD, Stiekema WJ, van Ham RC.

BMC Genomics. 2009 Apr 9;10:154. doi: 10.1186/1471-2164-10-154.

PMID:
19358722
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Alternative splicing and proteome diversity in plants: the tip of the iceberg has just emerged.

Kazan K.

Trends Plant Sci. 2003 Oct;8(10):468-71. Review.

PMID:
14557042
[PubMed - indexed for MEDLINE]
16.

The proteomic complexity and rise of the primordial ancestor of diversified life.

Kim KM, Caetano-Anollés G.

BMC Evol Biol. 2011 May 25;11:140. doi: 10.1186/1471-2148-11-140.

PMID:
21612591
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Assessing the impact of alternative splicing on domain interactions in the human proteome.

Resch A, Xing Y, Modrek B, Gorlick M, Riley R, Lee C.

J Proteome Res. 2004 Jan-Feb;3(1):76-83.

PMID:
14998166
[PubMed - indexed for MEDLINE]
18.

Expansion of the eukaryotic proteome by alternative splicing.

Nilsen TW, Graveley BR.

Nature. 2010 Jan 28;463(7280):457-63. doi: 10.1038/nature08909. Review.

PMID:
20110989
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Dual coding in alternative reading frames correlates with intrinsic protein disorder.

Kovacs E, Tompa P, Liliom K, Kalmar L.

Proc Natl Acad Sci U S A. 2010 Mar 23;107(12):5429-34. doi: 10.1073/pnas.0907841107. Epub 2010 Mar 8.

PMID:
20212158
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

A question of size: the eukaryotic proteome and the problems in defining it.

Harrison PM, Kumar A, Lang N, Snyder M, Gerstein M.

Nucleic Acids Res. 2002 Mar 1;30(5):1083-90.

PMID:
11861898
[PubMed - indexed for MEDLINE]
Free PMC Article

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