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Results: 1 to 20 of 114

1.

Hundreds of putatively functional small open reading frames in Drosophila.

Ladoukakis E, Pereira V, Magny EG, Eyre-Walker A, Couso JP.

Genome Biol. 2011 Nov 25;12(11):R118. doi: 10.1186/gb-2011-12-11-r118.

PMID:
22118156
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Extensive translation of small Open Reading Frames revealed by Poly-Ribo-Seq.

Aspden JL, Eyre-Walker YC, Phillips RJ, Amin U, Mumtaz MA, Brocard M, Couso JP.

Elife. 2014 Aug 21;3. doi: 10.7554/eLife.03528.

PMID:
25144939
[PubMed - in process]
Free Article
3.

Assessing the impact of comparative genomic sequence data on the functional annotation of the Drosophila genome.

Bergman CM, Pfeiffer BD, Rincón-Limas DE, Hoskins RA, Gnirke A, Mungall CJ, Wang AM, Kronmiller B, Pacleb J, Park S, Stapleton M, Wan K, George RA, de Jong PJ, Botas J, Rubin GM, Celniker SE.

Genome Biol. 2002;3(12):RESEARCH0086. Epub 2002 Dec 30.

PMID:
12537575
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Comparative genomic analysis of novel conserved peptide upstream open reading frames in Drosophila melanogaster and other dipteran species.

Hayden CA, Bosco G.

BMC Genomics. 2008 Feb 1;9:61. doi: 10.1186/1471-2164-9-61.

PMID:
18237443
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Combining in silico prediction and ribosome profiling in a genome-wide search for novel putatively coding sORFs.

Crappé J, Van Criekinge W, Trooskens G, Hayakawa E, Luyten W, Baggerman G, Menschaert G.

BMC Genomics. 2013 Sep 23;14:648. doi: 10.1186/1471-2164-14-648.

PMID:
24059539
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

[HB mobile element in the Drosophila melanogaster genome: structural and functional analyses].

Nefedova LN, Kim AI.

Genetika. 2007 May;43(5):620-32. Russian.

PMID:
17633555
[PubMed - indexed for MEDLINE]
7.

A large number of novel coding small open reading frames in the intergenic regions of the Arabidopsis thaliana genome are transcribed and/or under purifying selection.

Hanada K, Zhang X, Borevitz JO, Li WH, Shiu SH.

Genome Res. 2007 May;17(5):632-40. Epub 2007 Mar 29.

PMID:
17395691
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Comparison of mealybug (Planococcus lilacinus) and fruit fly genomes: isolation and analysis of conserved sequences and their utility in studying synteny in the mealybug.

Mohan KN, Rani BS, Selvam S, Debarshi S, Kadandale JS.

Cytogenet Genome Res. 2007;119(3-4):255-62. doi: 10.1159/000112071. Epub 2008 Feb 1.

PMID:
18253039
[PubMed - indexed for MEDLINE]
9.

Conserved regulation of cardiac calcium uptake by peptides encoded in small open reading frames.

Magny EG, Pueyo JI, Pearl FM, Cespedes MA, Niven JE, Bishop SA, Couso JP.

Science. 2013 Sep 6;341(6150):1116-20. doi: 10.1126/science.1238802. Epub 2013 Aug 22.

PMID:
23970561
[PubMed - indexed for MEDLINE]
Free Article
10.

A search for reverse transcriptase-coding sequences reveals new non-LTR retrotransposons in the genome of Drosophila melanogaster.

Berezikov E, Bucheton A, Busseau I.

Genome Biol. 2000;1(6):RESEARCH0012. Epub 2000 Dec 4.

PMID:
11178266
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Computational identification of Drosophila microRNA genes.

Lai EC, Tomancak P, Williams RW, Rubin GM.

Genome Biol. 2003;4(7):R42. Epub 2003 Jun 30.

PMID:
12844358
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Conserved introns reveal novel transcripts in Drosophila melanogaster.

Hiller M, Findeiss S, Lein S, Marz M, Nickel C, Rose D, Schulz C, Backofen R, Prohaska SJ, Reuter G, Stadler PF.

Genome Res. 2009 Jul;19(7):1289-300. doi: 10.1101/gr.090050.108. Epub 2009 May 20.

PMID:
19458021
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison.

Halligan DL, Keightley PD.

Genome Res. 2006 Jul;16(7):875-84. Epub 2006 Jun 2.

PMID:
16751341
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Identification of unannotated exons of low abundance transcripts in Drosophila melanogaster and cloning of a new serine protease gene upregulated upon injury.

Maia RM, Valente V, Cunha MA, Sousa JF, Araujo DD, Silva WA Jr, Zago MA, Dias-Neto E, Souza SJ, Simpson AJ, Monesi N, Ramos RG, Espreafico EM, Paçó-Larson ML.

BMC Genomics. 2007 Jul 24;8:249.

PMID:
17650329
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster.

Tupy JL, Bailey AM, Dailey G, Evans-Holm M, Siebel CW, Misra S, Celniker SE, Rubin GM.

Proc Natl Acad Sci U S A. 2005 Apr 12;102(15):5495-500. Epub 2005 Apr 4. Erratum in: Proc Natl Acad Sci U S A. 2005 Jun 7;102(23):8392.

PMID:
15809421
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

A gene expression map for the euchromatic genome of Drosophila melanogaster.

Stolc V, Gauhar Z, Mason C, Halasz G, van Batenburg MF, Rifkin SA, Hua S, Herreman T, Tongprasit W, Barbano PE, Bussemaker HJ, White KP.

Science. 2004 Oct 22;306(5696):655-60.

PMID:
15499012
[PubMed - indexed for MEDLINE]
Free Article
17.

The gag coding region of the Drosophila telomeric retrotransposon, HeT-A, has an internal frame shift and a length polymorphic region.

Pardue ML, Danilevskaya ON, Lowenhaupt K, Wong J, Erby K.

J Mol Evol. 1996 Dec;43(6):572-83.

PMID:
8995054
[PubMed - indexed for MEDLINE]
18.

uPEPperoni: an online tool for upstream open reading frame location and analysis of transcript conservation.

Skarshewski A, Stanton-Cook M, Huber T, Al Mansoori S, Smith R, Beatson SA, Rothnagel JA.

BMC Bioinformatics. 2014 Feb 1;15:36. doi: 10.1186/1471-2105-15-36.

PMID:
24484385
[PubMed - indexed for MEDLINE]
Free PMC Article
19.
20.

The urate oxidase gene of Drosophila pseudoobscura and Drosophila melanogaster: evolutionary changes of sequence and regulation.

Friedman TB, Burnett JB, Lootens S, Steinman R, Wallrath LL.

J Mol Evol. 1992 Jan;34(1):62-77.

PMID:
1556745
[PubMed - indexed for MEDLINE]

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