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Results: 1 to 20 of 131

1.

Discovery of active enhancers through bidirectional expression of short transcripts.

Melgar MF, Collins FS, Sethupathy P.

Genome Biol. 2011 Nov 14;12(11):R113. doi: 10.1186/gb-2011-12-11-r113.

PMID:
22082242
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome.

Heintzman ND, Stuart RK, Hon G, Fu Y, Ching CW, Hawkins RD, Barrera LO, Van Calcar S, Qu C, Ching KA, Wang W, Weng Z, Green RD, Crawford GE, Ren B.

Nat Genet. 2007 Mar;39(3):311-8. Epub 2007 Feb 4.

PMID:
17277777
[PubMed - indexed for MEDLINE]
3.

Integrative genome-wide chromatin signature analysis using finite mixture models.

Taslim C, Lin S, Huang K, Huang TH.

BMC Genomics. 2012;13 Suppl 6:S3. doi: 10.1186/1471-2164-13-S6-S3. Epub 2012 Oct 26.

PMID:
23134707
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

A dynamic H3K27ac signature identifies VEGFA-stimulated endothelial enhancers and requires EP300 activity.

Zhang B, Day DS, Ho JW, Song L, Cao J, Christodoulou D, Seidman JG, Crawford GE, Park PJ, Pu WT.

Genome Res. 2013 Jun;23(6):917-27. doi: 10.1101/gr.149674.112. Epub 2013 Apr 1.

PMID:
23547170
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

A unique chromatin signature uncovers early developmental enhancers in humans.

Rada-Iglesias A, Bajpai R, Swigut T, Brugmann SA, Flynn RA, Wysocka J.

Nature. 2011 Feb 10;470(7333):279-83. doi: 10.1038/nature09692. Epub 2010 Dec 15.

PMID:
21160473
[PubMed - indexed for MEDLINE]
6.

Enhancer identification in mouse embryonic stem cells using integrative modeling of chromatin and genomic features.

Chen CY, Morris Q, Mitchell JA.

BMC Genomics. 2012 Apr 26;13:152. doi: 10.1186/1471-2164-13-152.

PMID:
22537144
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Genome-wide phosphoacetylation of histone H3 at Drosophila enhancers and promoters.

Kellner WA, Ramos E, Van Bortle K, Takenaka N, Corces VG.

Genome Res. 2012 Jun;22(6):1081-8. doi: 10.1101/gr.136929.111. Epub 2012 Apr 16.

PMID:
22508764
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns.

Roh TY, Wei G, Farrell CM, Zhao K.

Genome Res. 2007 Jan;17(1):74-81. Epub 2006 Nov 29.

PMID:
17135569
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Chromatin state signatures associated with tissue-specific gene expression and enhancer activity in the embryonic limb.

Cotney J, Leng J, Oh S, DeMare LE, Reilly SK, Gerstein MB, Noonan JP.

Genome Res. 2012 Jun;22(6):1069-80. doi: 10.1101/gr.129817.111. Epub 2012 Mar 15.

PMID:
22421546
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genomic analyses of transcription factor binding, histone acetylation, and gene expression reveal mechanistically distinct classes of estrogen-regulated promoters.

Kininis M, Chen BS, Diehl AG, Isaacs GD, Zhang T, Siepel AC, Clark AG, Kraus WL.

Mol Cell Biol. 2007 Jul;27(14):5090-104. Epub 2007 May 21.

PMID:
17515612
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Clustered ChIP-Seq-defined transcription factor binding sites and histone modifications map distinct classes of regulatory elements.

Rye M, Sætrom P, Håndstad T, Drabløs F.

BMC Biol. 2011 Nov 24;9:80. doi: 10.1186/1741-7007-9-80.

PMID:
22115494
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Chromatin architecture near a potential 3' end of the igh locus involves modular regulation of histone modifications during B-Cell development and in vivo occupancy at CTCF sites.

Garrett FE, Emelyanov AV, Sepulveda MA, Flanagan P, Volpi S, Li F, Loukinov D, Eckhardt LA, Lobanenkov VV, Birshtein BK.

Mol Cell Biol. 2005 Feb;25(4):1511-25.

PMID:
15684400
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Dynamics of enhancer chromatin signatures mark the transition from pluripotency to cell specification during embryogenesis.

Bogdanovic O, Fernandez-Miñán A, Tena JJ, de la Calle-Mustienes E, Hidalgo C, van Kruysbergen I, van Heeringen SJ, Veenstra GJ, Gómez-Skarmeta JL.

Genome Res. 2012 Oct;22(10):2043-53. doi: 10.1101/gr.134833.111. Epub 2012 May 16.

PMID:
22593555
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

ChromaSig: a probabilistic approach to finding common chromatin signatures in the human genome.

Hon G, Ren B, Wang W.

PLoS Comput Biol. 2008 Oct;4(10):e1000201. doi: 10.1371/journal.pcbi.1000201. Epub 2008 Oct 17.

PMID:
18927605
[PubMed - indexed for MEDLINE]
Free PMC Article
16.
17.

Genomic targeting of methylated DNA: influence of methylation on transcription, replication, chromatin structure, and histone acetylation.

Schübeler D, Lorincz MC, Cimbora DM, Telling A, Feng YQ, Bouhassira EE, Groudine M.

Mol Cell Biol. 2000 Dec;20(24):9103-12.

PMID:
11094062
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Chromatin signatures of active enhancers.

Spicuglia S, Vanhille L.

Nucleus. 2012 Mar 1;3(2):126-31. doi: 10.4161/nucl.19232. Epub 2012 Mar 1. Review.

PMID:
22555596
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

High-resolution profiling of histone methylations in the human genome.

Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K.

Cell. 2007 May 18;129(4):823-37.

PMID:
17512414
[PubMed - indexed for MEDLINE]
Free Article
20.

Noncoding transcription at enhancers: general principles and functional models.

Natoli G, Andrau JC.

Annu Rev Genet. 2012;46:1-19. doi: 10.1146/annurev-genet-110711-155459. Epub 2012 Aug 16. Review.

PMID:
22905871
[PubMed - indexed for MEDLINE]

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