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Results: 1 to 20 of 108

1.

Genome-wide analysis of chromatin features identifies histone modification sensitive and insensitive yeast transcription factors.

Cheng C, Shou C, Yip KY, Gerstein MB.

Genome Biol. 2011 Nov 7;12(11):R111. doi: 10.1186/gb-2011-12-11-r111.

PMID:
22060676
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Histone acetylation and transcriptional regulation in the genome of Saccharomyces cerevisiae.

Guo X, Tatsuoka K, Liu R.

Bioinformatics. 2006 Feb 15;22(4):392-9. Epub 2005 Dec 8.

PMID:
16339282
[PubMed - indexed for MEDLINE]
Free Article
3.

Genome-wide integration on transcription factors, histone acetylation and gene expression reveals genes co-regulated by histone modification patterns.

Natsume-Kitatani Y, Shiga M, Mamitsuka H.

PLoS One. 2011;6(7):e22281. doi: 10.1371/journal.pone.0022281. Epub 2011 Jul 29.

PMID:
21829453
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Computational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information.

Wang J.

BMC Genomics. 2011 Apr 1;12:172. doi: 10.1186/1471-2164-12-172.

PMID:
21457549
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Genome-wide analysis of the relationship between transcriptional regulation by Rpd3p and the histone H3 and H4 amino termini in budding yeast.

Sabet N, Volo S, Yu C, Madigan JP, Morse RH.

Mol Cell Biol. 2004 Oct;24(20):8823-33.

PMID:
15456858
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Integrating genomic data to predict transcription factor binding.

Holloway DT, Kon M, DeLisi C.

Genome Inform. 2005;16(1):83-94.

PMID:
16362910
[PubMed - indexed for MEDLINE]
7.

Mapping global histone acetylation patterns to gene expression.

Kurdistani SK, Tavazoie S, Grunstein M.

Cell. 2004 Jun 11;117(6):721-33.

PMID:
15186774
[PubMed - indexed for MEDLINE]
Free Article
8.

High-resolution genome-wide mapping of histone modifications.

Roh TY, Ngau WC, Cui K, Landsman D, Zhao K.

Nat Biotechnol. 2004 Aug;22(8):1013-6. Epub 2004 Jul 4.

PMID:
15235610
[PubMed - indexed for MEDLINE]
9.

Genome-wide nucleosome mapping of Plasmodium falciparum reveals histone-rich coding and histone-poor intergenic regions and chromatin remodeling of core and subtelomeric genes.

Westenberger SJ, Cui L, Dharia N, Winzeler E, Cui L.

BMC Genomics. 2009 Dec 16;10:610. doi: 10.1186/1471-2164-10-610.

PMID:
20015349
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Efficient transcriptional silencing in Saccharomyces cerevisiae requires a heterochromatin histone acetylation pattern.

Braunstein M, Sobel RE, Allis CD, Turner BM, Broach JR.

Mol Cell Biol. 1996 Aug;16(8):4349-56.

PMID:
8754835
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Clustered ChIP-Seq-defined transcription factor binding sites and histone modifications map distinct classes of regulatory elements.

Rye M, Sætrom P, Håndstad T, Drabløs F.

BMC Biol. 2011 Nov 24;9:80. doi: 10.1186/1741-7007-9-80.

PMID:
22115494
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Genome-wide binding map of the histone deacetylase Rpd3 in yeast.

Kurdistani SK, Robyr D, Tavazoie S, Grunstein M.

Nat Genet. 2002 Jul;31(3):248-54. Epub 2002 Jun 24.

PMID:
12089521
[PubMed - indexed for MEDLINE]
13.

Statistical assessment of the global regulatory role of histone acetylation in Saccharomyces cerevisiae.

Yuan GC, Ma P, Zhong W, Liu JS.

Genome Biol. 2006;7(8):R70. Epub 2006 Aug 2.

PMID:
16884527
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Roles of transcription factor Mot3 and chromatin in repression of the hypoxic gene ANB1 in yeast.

Kastaniotis AJ, Mennella TA, Konrad C, Torres AM, Zitomer RS.

Mol Cell Biol. 2000 Oct;20(19):7088-98.

PMID:
10982825
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Global regulation by the yeast Spt10 protein is mediated through chromatin structure and the histone upstream activating sequence elements.

Eriksson PR, Mendiratta G, McLaughlin NB, Wolfsberg TG, Mariño-Ramírez L, Pompa TA, Jainerin M, Landsman D, Shen CH, Clark DJ.

Mol Cell Biol. 2005 Oct;25(20):9127-37.

PMID:
16199888
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Deciphering the roles of the histone H2B N-terminal domain in genome-wide transcription.

Parra MA, Kerr D, Fahy D, Pouchnik DJ, Wyrick JJ.

Mol Cell Biol. 2006 May;26(10):3842-52.

PMID:
16648479
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Genome-wide relationships between TAF1 and histone acetyltransferases in Saccharomyces cerevisiae.

Durant M, Pugh BF.

Mol Cell Biol. 2006 Apr;26(7):2791-802.

PMID:
16537921
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Stress-dependent dynamics of global chromatin remodeling in yeast: dual role for SWI/SNF in the heat shock stress response.

Shivaswamy S, Iyer VR.

Mol Cell Biol. 2008 Apr;28(7):2221-34. doi: 10.1128/MCB.01659-07. Epub 2008 Jan 22.

PMID:
18212068
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A genome-wide analysis in Saccharomyces cerevisiae demonstrates the influence of chromatin modifiers on transcription.

Steinfeld I, Shamir R, Kupiec M.

Nat Genet. 2007 Mar;39(3):303-9.

PMID:
17325681
[PubMed - indexed for MEDLINE]
20.

Genome-wide analysis of the effect of histone modifications on the coexpression of neighboring genes in Saccharomyces cerevisiae.

Deng Y, Dai X, Xiang Q, Dai Z, He C, Wang J, Feng J.

BMC Genomics. 2010 Oct 9;11:550. doi: 10.1186/1471-2164-11-550.

PMID:
20932330
[PubMed - indexed for MEDLINE]
Free PMC Article

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