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Results: 1 to 20 of 153

1.

Variation in global codon usage bias among prokaryotic organisms is associated with their lifestyles.

Botzman M, Margalit H.

Genome Biol. 2011 Oct 27;12(10):R109. doi: 10.1186/gb-2011-12-10-r109.

PMID:
22032172
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Codon usage bias in prokaryotic pyrimidine-ending codons is associated with the degeneracy of the encoded amino acids.

Wald N, Alroy M, Botzman M, Margalit H.

Nucleic Acids Res. 2012 Aug;40(15):7074-83. doi: 10.1093/nar/gks348. Epub 2012 May 11.

PMID:
22581775
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content.

Singer GA, Hickey DA.

Gene. 2003 Oct 23;317(1-2):39-47.

PMID:
14604790
[PubMed - indexed for MEDLINE]
4.

Codon bias signatures, organization of microorganisms in codon space, and lifestyle.

Carbone A, Képès F, Zinovyev A.

Mol Biol Evol. 2005 Mar;22(3):547-61. Epub 2004 Nov 10. Erratum in: Mol Biol Evol. 2005 Apr;22(4):1158.

PMID:
15537809
[PubMed - indexed for MEDLINE]
Free Article
5.

Quantifying the species-specificity in genomic signatures, synonymous codon choice, amino acid usage and G+C content.

Sandberg R, Bränden CI, Ernberg I, Cöster J.

Gene. 2003 Jun 5;311:35-42.

PMID:
12853136
[PubMed - indexed for MEDLINE]
6.

Synonymous codon usage and its potential link with optimal growth temperature in prokaryotes.

Lobry JR, Necşulea A.

Gene. 2006 Dec 30;385:128-36. Epub 2006 Aug 22.

PMID:
16989961
[PubMed - indexed for MEDLINE]
7.

Genes optimized by evolution for accurate and fast translation encode in Archaea and Bacteria a broad and characteristic spectrum of protein functions.

von Mandach C, Merkl R.

BMC Genomics. 2010 Nov 4;11:617. doi: 10.1186/1471-2164-11-617.

PMID:
21050470
[PubMed - indexed for MEDLINE]
Free PMC Article
8.
9.

Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes.

Wan XF, Xu D, Kleinhofs A, Zhou J.

BMC Evol Biol. 2004 Jun 28;4:19.

PMID:
15222899
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Translational selection is ubiquitous in prokaryotes.

Supek F, Skunca N, Repar J, Vlahovicek K, Smuc T.

PLoS Genet. 2010 Jun 24;6(6):e1001004. doi: 10.1371/journal.pgen.1001004.

PMID:
20585573
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Universal pattern and diverse strengths of successive synonymous codon bias in three domains of life, particularly among prokaryotic genomes.

Guo FB, Ye YN, Zhao HL, Lin D, Wei W.

DNA Res. 2012 Dec;19(6):477-85. doi: 10.1093/dnares/dss027. Epub 2012 Nov 6.

PMID:
23132389
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Codon usage between genomes is constrained by genome-wide mutational processes.

Chen SL, Lee W, Hottes AK, Shapiro L, McAdams HH.

Proc Natl Acad Sci U S A. 2004 Mar 9;101(10):3480-5. Epub 2004 Feb 27.

PMID:
14990797
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Gender-specific selection on codon usage in plant genomes.

Whittle CA, Malik MR, Krochko JE.

BMC Genomics. 2007 Jun 13;8:169.

PMID:
17567911
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes.

Knight RD, Freeland SJ, Landweber LF.

Genome Biol. 2001;2(4):RESEARCH0010. Epub 2001 Mar 22.

PMID:
11305938
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Molecular evolution of synonymous codon usage in Populus.

Ingvarsson PK.

BMC Evol Biol. 2008 Nov 4;8:307. doi: 10.1186/1471-2148-8-307.

PMID:
18983655
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Preferred and avoided codon pairs in three domains of life.

Tats A, Tenson T, Remm M.

BMC Genomics. 2008 Oct 8;9:463. doi: 10.1186/1471-2164-9-463.

PMID:
18842120
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Compositional correlation and codon usage studies in Buchnera aphidicola.

Gupta SK, Bhattacharyya TK, Ghosh TC.

Indian J Biochem Biophys. 2002 Feb;39(1):35-48.

PMID:
22896887
[PubMed - indexed for MEDLINE]
18.

A general model of codon bias due to GC mutational bias.

Palidwor GA, Perkins TJ, Xia X.

PLoS One. 2010 Oct 27;5(10):e13431. doi: 10.1371/journal.pone.0013431.

PMID:
21048949
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Codon usage bias from tRNA's point of view: redundancy, specialization, and efficient decoding for translation optimization.

Rocha EP.

Genome Res. 2004 Nov;14(11):2279-86. Epub 2004 Oct 12. Erratum in: Genome Res. 2004 Dec;14(12):2510.

PMID:
15479947
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Variation in the strength of selected codon usage bias among bacteria.

Sharp PM, Bailes E, Grocock RJ, Peden JF, Sockett RE.

Nucleic Acids Res. 2005 Feb 23;33(4):1141-53. Print 2005.

PMID:
15728743
[PubMed - indexed for MEDLINE]
Free PMC Article

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