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Results: 1 to 20 of 86

1.

Integrating diverse genomic data using gene sets.

Tyekucheva S, Marchionni L, Karchin R, Parmigiani G.

Genome Biol. 2011 Oct 21;12(10):R105. doi: 10.1186/gb-2011-12-10-r105.

PMID:
22018358
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Identifying causal genes and dysregulated pathways in complex diseases.

Kim YA, Wuchty S, Przytycka TM.

PLoS Comput Biol. 2011 Mar;7(3):e1001095. doi: 10.1371/journal.pcbi.1001095. Epub 2011 Mar 3.

PMID:
21390271
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Bioinformatics and cancer: an essential alliance.

Dopazo J.

Clin Transl Oncol. 2006 Jun;8(6):409-15. Review.

PMID:
16790393
[PubMed - indexed for MEDLINE]
4.

Genomic changes and gene expression profiles reveal that established glioma cell lines are poorly representative of primary human gliomas.

Li A, Walling J, Kotliarov Y, Center A, Steed ME, Ahn SJ, Rosenblum M, Mikkelsen T, Zenklusen JC, Fine HA.

Mol Cancer Res. 2008 Jan;6(1):21-30. doi: 10.1158/1541-7786.MCR-07-0280. Epub 2008 Jan 9.

PMID:
18184972
[PubMed - indexed for MEDLINE]
Free Article
5.

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists.

Eden E, Navon R, Steinfeld I, Lipson D, Yakhini Z.

BMC Bioinformatics. 2009 Feb 3;10:48. doi: 10.1186/1471-2105-10-48.

PMID:
19192299
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Concordance of gene expression and functional correlation patterns across the NCI-60 cell lines and the Cancer Genome Atlas glioblastoma samples.

Zeeberg BR, Kohn KW, Kahn A, Larionov V, Weinstein JN, Reinhold W, Pommier Y.

PLoS One. 2012;7(7):e40062. doi: 10.1371/journal.pone.0040062. Epub 2012 Jul 26.

PMID:
22848369
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

SpeCond: a method to detect condition-specific gene expression.

Cavalli FM, Bourgon R, Vaquerizas JM, Luscombe NM.

Genome Biol. 2011 Oct 18;12(10):R101. doi: 10.1186/gb-2011-12-10-r101. Erratum in: Genome Biol. 2011;12(12):413. Huber, Wolfgang [removed].

PMID:
22008066
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Integrative analysis of gene expression and copy number alterations using canonical correlation analysis.

Soneson C, Lilljebjörn H, Fioretos T, Fontes M.

BMC Bioinformatics. 2010 Apr 15;11:191. doi: 10.1186/1471-2105-11-191.

PMID:
20398334
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Data simulation software for whole-genome association and other studies in human genetics.

Dudek SM, Motsinger AA, Velez DR, Williams SM, Ritchie MD.

Pac Symp Biocomput. 2006:499-510.

PMID:
17094264
[PubMed - indexed for MEDLINE]
Free Article
10.

Gene regulation in glioblastoma: a combinatorial analysis of microRNAs and transcription factors.

Gong X, Sun J, Zhao Z.

Int J Comput Biol Drug Des. 2011;4(2):111-26. doi: 10.1504/IJCBDD.2011.041006. Epub 2011 Jun 28.

PMID:
21712563
[PubMed - indexed for MEDLINE]
11.

Identification of novel genomic markers related to progression to glioblastoma through genomic profiling of 25 primary glioma cell lines.

Roversi G, Pfundt R, Moroni RF, Magnani I, van Reijmersdal S, Pollo B, Straatman H, Larizza L, Schoenmakers EF.

Oncogene. 2006 Mar 9;25(10):1571-83.

PMID:
16247447
[PubMed - indexed for MEDLINE]
12.

DNA copy number variation and gene expression analyses reveal the implication of specific oncogenes and genes in GBM.

Margareto J, Leis O, Larrarte E, Pomposo IC, Garibi JM, Lafuente JV.

Cancer Invest. 2009 Jun;27(5):541-8. doi: 10.1080/07357900802563044.

PMID:
19219654
[PubMed - indexed for MEDLINE]
13.

Towards precise classification of cancers based on robust gene functional expression profiles.

Guo Z, Zhang T, Li X, Wang Q, Xu J, Yu H, Zhu J, Wang H, Wang C, Topol EJ, Wang Q, Rao S.

BMC Bioinformatics. 2005 Mar 17;6:58.

PMID:
15774002
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Integrative genome-wide analysis reveals a robust genomic glioblastoma signature associated with copy number driving changes in gene expression.

de Tayrac M, Etcheverry A, Aubry M, Saïkali S, Hamlat A, Quillien V, Le Treut A, Galibert MD, Mosser J.

Genes Chromosomes Cancer. 2009 Jan;48(1):55-68. doi: 10.1002/gcc.20618.

PMID:
18828157
[PubMed - indexed for MEDLINE]
15.

Combined analysis of genome-wide expression and copy number profiles to identify key altered genomic regions in cancer.

Fontanillo C, Aibar S, Sanchez-Santos JM, De Las Rivas J.

BMC Genomics. 2012;13 Suppl 5:S5. doi: 10.1186/1471-2164-13-S5-S5. Epub 2012 Oct 19.

PMID:
23095915
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Identifying master regulators of cancer and their downstream targets by integrating genomic and epigenomic features.

Gevaert O, Plevritis S.

Pac Symp Biocomput. 2013:123-34.

PMID:
23424118
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

CNAmet: an R package for integrating copy number, methylation and expression data.

Louhimo R, Hautaniemi S.

Bioinformatics. 2011 Mar 15;27(6):887-8. doi: 10.1093/bioinformatics/btr019. Epub 2011 Jan 12.

PMID:
21228048
[PubMed - indexed for MEDLINE]
Free Article
18.

A human functional protein interaction network and its application to cancer data analysis.

Wu G, Feng X, Stein L.

Genome Biol. 2010;11(5):R53. doi: 10.1186/gb-2010-11-5-r53. Epub 2010 May 19.

PMID:
20482850
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

Integrating genetic and gene expression evidence into genome-wide association analysis of gene sets.

Xiong Q, Ancona N, Hauser ER, Mukherjee S, Furey TS.

Genome Res. 2012 Feb;22(2):386-97. doi: 10.1101/gr.124370.111. Epub 2011 Sep 22. Erratum in: Genome Res. 2013 May;23(5):905.

PMID:
21940837
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Cross-platform comparison and visualisation of gene expression data using co-inertia analysis.

Culhane AC, Perrière G, Higgins DG.

BMC Bioinformatics. 2003 Nov 21;4:59.

PMID:
14633289
[PubMed - indexed for MEDLINE]
Free PMC Article

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