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Results: 1 to 20 of 275

1.

Differential patterns of intronic and exonic DNA regions with respect to RNA polymerase II occupancy, nucleosome density and H3K36me3 marking in fission yeast.

Wilhelm BT, Marguerat S, Aligianni S, Codlin S, Watt S, Bähler J.

Genome Biol. 2011 Aug 22;12(8):R82. doi: 10.1186/gb-2011-12-8-r82.

PMID:
21859475
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Complex exon-intron marking by histone modifications is not determined solely by nucleosome distribution.

Dhami P, Saffrey P, Bruce AW, Dillon SC, Chiang K, Bonhoure N, Koch CM, Bye J, James K, Foad NS, Ellis P, Watkins NA, Ouwehand WH, Langford C, Andrews RM, Dunham I, Vetrie D.

PLoS One. 2010 Aug 23;5(8):e12339. doi: 10.1371/journal.pone.0012339.

PMID:
20808788
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

The in vivo kinetics of RNA polymerase II elongation during co-transcriptional splicing.

Brody Y, Neufeld N, Bieberstein N, Causse SZ, Böhnlein EM, Neugebauer KM, Darzacq X, Shav-Tal Y.

PLoS Biol. 2011 Jan 11;9(1):e1000573. doi: 10.1371/journal.pbio.1000573.

PMID:
21264352
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Co-transcriptional regulation of alternative pre-mRNA splicing.

Shukla S, Oberdoerffer S.

Biochim Biophys Acta. 2012 Jul;1819(7):673-83. doi: 10.1016/j.bbagrm.2012.01.014. Epub 2012 Feb 2. Review.

PMID:
22326677
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

Biased chromatin signatures around polyadenylation sites and exons.

Spies N, Nielsen CB, Padgett RA, Burge CB.

Mol Cell. 2009 Oct 23;36(2):245-54. doi: 10.1016/j.molcel.2009.10.008.

PMID:
19854133
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Genome-wide RNA polymerase II profiles and RNA accumulation reveal kinetics of transcription and associated epigenetic changes during diurnal cycles.

Le Martelot G, Canella D, Symul L, Migliavacca E, Gilardi F, Liechti R, Martin O, Harshman K, Delorenzi M, Desvergne B, Herr W, Deplancke B, Schibler U, Rougemont J, Guex N, Hernandez N, Naef F; CycliX Consortium.

PLoS Biol. 2012;10(11):e1001442. doi: 10.1371/journal.pbio.1001442. Epub 2012 Nov 27.

PMID:
23209382
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Genome-wide nucleosome mapping of Plasmodium falciparum reveals histone-rich coding and histone-poor intergenic regions and chromatin remodeling of core and subtelomeric genes.

Westenberger SJ, Cui L, Dharia N, Winzeler E, Cui L.

BMC Genomics. 2009 Dec 16;10:610. doi: 10.1186/1471-2164-10-610.

PMID:
20015349
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution.

Wilhelm BT, Marguerat S, Watt S, Schubert F, Wood V, Goodhead I, Penkett CJ, Rogers J, Bähler J.

Nature. 2008 Jun 26;453(7199):1239-43. doi: 10.1038/nature07002. Epub 2008 May 18.

PMID:
18488015
[PubMed - indexed for MEDLINE]
9.

Weakly positioned nucleosomes enhance the transcriptional competency of chromatin.

Belch Y, Yang J, Liu Y, Malkaram SA, Liu R, Riethoven JJ, Ladunga I.

PLoS One. 2010 Sep 24;5(9):e12984. doi: 10.1371/journal.pone.0012984.

PMID:
20886052
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Chromatin and epigenetic regulation of pre-mRNA processing.

Brown SJ, Stoilov P, Xing Y.

Hum Mol Genet. 2012 Oct 15;21(R1):R90-6. Epub 2012 Aug 29. Review.

PMID:
22936691
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Mechanism of histone survival during transcription by RNA polymerase II.

Kulaeva OI, Studitsky VM.

Transcription. 2010 Sep-Oct;1(2):85-8. doi: 10.4161/trns.1.2.12519.

PMID:
21326897
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Chromatin organization marks exon-intron structure.

Schwartz S, Meshorer E, Ast G.

Nat Struct Mol Biol. 2009 Sep;16(9):990-5. doi: 10.1038/nsmb.1659.

PMID:
19684600
[PubMed - indexed for MEDLINE]
13.

Differential chromatin marking of introns and expressed exons by H3K36me3.

Kolasinska-Zwierz P, Down T, Latorre I, Liu T, Liu XS, Ahringer J.

Nat Genet. 2009 Mar;41(3):376-81. doi: 10.1038/ng.322. Epub 2009 Feb 1.

PMID:
19182803
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

A positive feedback loop links opposing functions of P-TEFb/Cdk9 and histone H2B ubiquitylation to regulate transcript elongation in fission yeast.

Sansó M, Lee KM, Viladevall L, Jacques PÉ, Pagé V, Nagy S, Racine A, St Amour CV, Zhang C, Shokat KM, Schwer B, Robert F, Fisher RP, Tanny JC.

PLoS Genet. 2012;8(8):e1002822. doi: 10.1371/journal.pgen.1002822. Epub 2012 Aug 2.

PMID:
22876190
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

A unique nucleosome arrangement, maintained actively by chromatin remodelers facilitates transcription of yeast tRNA genes.

Kumar Y, Bhargava P.

BMC Genomics. 2013 Jun 17;14:402. doi: 10.1186/1471-2164-14-402.

PMID:
23767421
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

The Mi-2 homolog Mit1 actively positions nucleosomes within heterochromatin to suppress transcription.

Creamer KM, Job G, Shanker S, Neale GA, Lin YC, Bartholomew B, Partridge JF.

Mol Cell Biol. 2014 Jun;34(11):2046-61. doi: 10.1128/MCB.01609-13. Epub 2014 Mar 24.

PMID:
24662054
[PubMed - indexed for MEDLINE]
17.

Pause locally, splice globally.

Carrillo Oesterreich F, Bieberstein N, Neugebauer KM.

Trends Cell Biol. 2011 Jun;21(6):328-35. doi: 10.1016/j.tcb.2011.03.002. Epub 2011 Apr 27. Review.

PMID:
21530266
[PubMed - indexed for MEDLINE]
18.

Global analysis of nascent RNA reveals transcriptional pausing in terminal exons.

Carrillo Oesterreich F, Preibisch S, Neugebauer KM.

Mol Cell. 2010 Nov 24;40(4):571-81. doi: 10.1016/j.molcel.2010.11.004.

PMID:
21095587
[PubMed - indexed for MEDLINE]
Free Article
19.

RNA polymerase II pausing downstream of core histone genes is different from genes producing polyadenylated transcripts.

Anamika K, Gyenis À, Poidevin L, Poch O, Tora L.

PLoS One. 2012;7(6):e38769. doi: 10.1371/journal.pone.0038769. Epub 2012 Jun 11.

PMID:
22701709
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Transcription and RNA-processing in fission yeast mitochondria.

Schäfer B, Hansen M, Lang BF.

RNA. 2005 May;11(5):785-95. Epub 2005 Apr 5.

PMID:
15811919
[PubMed - indexed for MEDLINE]
Free PMC Article

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