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Results: 1 to 20 of 87

1.

BioGraph: unsupervised biomedical knowledge discovery via automated hypothesis generation.

Liekens AM, De Knijf J, Daelemans W, Goethals B, De Rijk P, Del-Favero J.

Genome Biol. 2011 Jun 22;12(6):R57. doi: 10.1186/gb-2011-12-6-r57.

PMID:
21696594
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

An environment for knowledge discovery in biology.

Barrera J, Cesar RM Jr, Ferreira JE, Gubitoso MD.

Comput Biol Med. 2004 Jul;34(5):427-47.

PMID:
15145713
[PubMed - indexed for MEDLINE]
3.

pubmed2ensembl: a resource for mining the biological literature on genes.

Baran J, Gerner M, Haeussler M, Nenadic G, Bergman CM.

PLoS One. 2011;6(9):e24716. doi: 10.1371/journal.pone.0024716. Epub 2011 Sep 29.

PMID:
21980353
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Text-mining solutions for biomedical research: enabling integrative biology.

Rebholz-Schuhmann D, Oellrich A, Hoehndorf R.

Nat Rev Genet. 2012 Dec;13(12):829-39. doi: 10.1038/nrg3337. Epub 2012 Nov 14. Review.

PMID:
23150036
[PubMed - indexed for MEDLINE]
5.

The Gaggle: an open-source software system for integrating bioinformatics software and data sources.

Shannon PT, Reiss DJ, Bonneau R, Baliga NS.

BMC Bioinformatics. 2006 Mar 28;7:176.

PMID:
16569235
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Text mining for traditional Chinese medical knowledge discovery: a survey.

Zhou X, Peng Y, Liu B.

J Biomed Inform. 2010 Aug;43(4):650-60. doi: 10.1016/j.jbi.2010.01.002. Epub 2010 Jan 13.

PMID:
20074663
[PubMed - indexed for MEDLINE]
Free Article
7.

Beyond the data deluge: data integration and bio-ontologies.

Blake JA, Bult CJ.

J Biomed Inform. 2006 Jun;39(3):314-20. Epub 2006 Feb 21.

PMID:
16564748
[PubMed - indexed for MEDLINE]
Free Article
8.

Literature mining for the discovery of hidden connections between drugs, genes and diseases.

Frijters R, van Vugt M, Smeets R, van Schaik R, de Vlieg J, Alkema W.

PLoS Comput Biol. 2010 Sep 23;6(9). pii: e1000943. doi: 10.1371/journal.pcbi.1000943.

PMID:
20885778
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Combining literature text mining with microarray data: advances for system biology modeling.

Faro A, Giordano D, Spampinato C.

Brief Bioinform. 2012 Jan;13(1):61-82. doi: 10.1093/bib/bbr018. Epub 2011 Jun 15. Review.

PMID:
21677032
[PubMed - indexed for MEDLINE]
Free Article
10.

Open-source tools for data mining.

Zupan B, Demsar J.

Clin Lab Med. 2008 Mar;28(1):37-54, vi. doi: 10.1016/j.cll.2007.10.002.

PMID:
18194717
[PubMed - indexed for MEDLINE]
11.

GeneNotes--a novel information management software for biologists.

Hong P, Wong WH.

BMC Bioinformatics. 2005 Feb 1;6:20.

PMID:
15686593
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Roles and applications of biomedical ontologies in experimental animal science.

Masuya H.

Exp Anim. 2012;61(4):365-73. Review.

PMID:
22850636
[PubMed - indexed for MEDLINE]
Free Article
13.

BioGateway: a semantic systems biology tool for the life sciences.

Antezana E, Blondé W, Egaña M, Rutherford A, Stevens R, De Baets B, Mironov V, Kuiper M.

BMC Bioinformatics. 2009 Oct 1;10 Suppl 10:S11. doi: 10.1186/1471-2105-10-S10-S11.

PMID:
19796395
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

*omeSOM: a software for clustering and visualization of transcriptional and metabolite data mined from interspecific crosses of crop plants.

Milone DH, Stegmayer GS, Kamenetzky L, López M, Lee JM, Giovannoni JJ, Carrari F.

BMC Bioinformatics. 2010 Aug 26;11:438. doi: 10.1186/1471-2105-11-438.

PMID:
20796314
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

KNODWAT: a scientific framework application for testing knowledge discovery methods for the biomedical domain.

Holzinger A, Zupan M.

BMC Bioinformatics. 2013 Jun 13;14:191. doi: 10.1186/1471-2105-14-191.

PMID:
23763826
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Datgan, a reusable software system for facile interrogation and visualization of complex transcription profiling data.

Howell GR, Walton DO, King BL, Libby RT, John SW.

BMC Genomics. 2011 Aug 24;12:429. doi: 10.1186/1471-2164-12-429.

PMID:
21864367
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Exploring patterns of epigenetic information with data mining techniques.

Aguiar-Pulido V, Seoane JA, Gestal M, Dorado J.

Curr Pharm Des. 2013;19(4):779-89. Review.

PMID:
23016855
[PubMed - indexed for MEDLINE]
18.

Semantic data integration and knowledge management to represent biological network associations.

Losko S, Heumann K.

Methods Mol Biol. 2009;563:241-58. doi: 10.1007/978-1-60761-175-2_13.

PMID:
19597789
[PubMed - indexed for MEDLINE]
19.

Nonnegative matrix factorization: an analytical and interpretive tool in computational biology.

Devarajan K.

PLoS Comput Biol. 2008 Jul 25;4(7):e1000029. doi: 10.1371/journal.pcbi.1000029. Review.

PMID:
18654623
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

JXP4BIGI: a generalized, Java XML-based approach for biological information gathering and integration.

Huang Y, Ni T, Zhou L, Su S.

Bioinformatics. 2003 Dec 12;19(18):2351-8.

PMID:
14668218
[PubMed - indexed for MEDLINE]
Free Article

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