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Results: 1 to 20 of 106

1.

5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells.

Stroud H, Feng S, Morey Kinney S, Pradhan S, Jacobsen SE.

Genome Biol. 2011 Jun 20;12(6):R54. doi: 10.1186/gb-2011-12-6-r54.

PMID:
21689397
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Genome-wide mapping of 5-hydroxymethylcytosine in embryonic stem cells.

Pastor WA, Pape UJ, Huang Y, Henderson HR, Lister R, Ko M, McLoughlin EM, Brudno Y, Mahapatra S, Kapranov P, Tahiliani M, Daley GQ, Liu XS, Ecker JR, Milos PM, Agarwal S, Rao A.

Nature. 2011 May 19;473(7347):394-7. doi: 10.1038/nature10102. Epub 2011 May 8.

PMID:
21552279
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

Genome-wide analysis of 5-hydroxymethylcytosine distribution reveals its dual function in transcriptional regulation in mouse embryonic stem cells.

Wu H, D'Alessio AC, Ito S, Wang Z, Cui K, Zhao K, Sun YE, Zhang Y.

Genes Dev. 2011 Apr 1;25(7):679-84. doi: 10.1101/gad.2036011.

PMID:
21460036
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation.

Ficz G, Branco MR, Seisenberger S, Santos F, Krueger F, Hore TA, Marques CJ, Andrews S, Reik W.

Nature. 2011 May 19;473(7347):398-402. doi: 10.1038/nature10008. Epub 2011 Apr 3.

PMID:
21460836
[PubMed - indexed for MEDLINE]
5.

Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome.

Yu M, Hon GC, Szulwach KE, Song CX, Zhang L, Kim A, Li X, Dai Q, Shen Y, Park B, Min JH, Jin P, Ren B, He C.

Cell. 2012 Jun 8;149(6):1368-80. doi: 10.1016/j.cell.2012.04.027. Epub 2012 May 17.

PMID:
22608086
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Genome-wide regulation of 5hmC, 5mC, and gene expression by Tet1 hydroxylase in mouse embryonic stem cells.

Xu Y, Wu F, Tan L, Kong L, Xiong L, Deng J, Barbera AJ, Zheng L, Zhang H, Huang S, Min J, Nicholson T, Chen T, Xu G, Shi Y, Zhang K, Shi YG.

Mol Cell. 2011 May 20;42(4):451-64. doi: 10.1016/j.molcel.2011.04.005. Epub 2011 Apr 21.

PMID:
21514197
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

High-resolution enzymatic mapping of genomic 5-hydroxymethylcytosine in mouse embryonic stem cells.

Sun Z, Terragni J, Borgaro JG, Liu Y, Yu L, Guan S, Wang H, Sun D, Cheng X, Zhu Z, Pradhan S, Zheng Y.

Cell Rep. 2013 Feb 21;3(2):567-76. doi: 10.1016/j.celrep.2013.01.001. Epub 2013 Jan 24. Erratum in: Cell Rep. 2013 Mar 28;3(3):968. Jolyon, Terragni [corrected to Terragni, Jolyon].

PMID:
23352666
[PubMed - indexed for MEDLINE]
Free PMC Article
8.

Enhancer identification in mouse embryonic stem cells using integrative modeling of chromatin and genomic features.

Chen CY, Morris Q, Mitchell JA.

BMC Genomics. 2012 Apr 26;13:152. doi: 10.1186/1471-2164-13-152.

PMID:
22537144
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

5-hydroxymethylcytosine represses the activity of enhancers in embryonic stem cells: a new epigenetic signature for gene regulation.

Choi I, Kim R, Lim HW, Kaestner KH, Won KJ.

BMC Genomics. 2014 Aug 9;15:670. doi: 10.1186/1471-2164-15-670.

PMID:
25106691
[PubMed - in process]
Free PMC Article
10.

Genome-wide profiling of 5-formylcytosine reveals its roles in epigenetic priming.

Song CX, Szulwach KE, Dai Q, Fu Y, Mao SQ, Lin L, Street C, Li Y, Poidevin M, Wu H, Gao J, Liu P, Li L, Xu GL, Jin P, He C.

Cell. 2013 Apr 25;153(3):678-91. doi: 10.1016/j.cell.2013.04.001. Epub 2013 Apr 18.

PMID:
23602153
[PubMed - indexed for MEDLINE]
Free PMC Article
11.

Genome-wide comparison of DNA hydroxymethylation in mouse embryonic stem cells and neural progenitor cells by a new comparative hMeDIP-seq method.

Tan L, Xiong L, Xu W, Wu F, Huang N, Xu Y, Kong L, Zheng L, Schwartz L, Shi Y, Shi YG.

Nucleic Acids Res. 2013 Apr;41(7):e84. doi: 10.1093/nar/gkt091. Epub 2013 Feb 13.

PMID:
23408859
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Quantitative sequencing of 5-formylcytosine in DNA at single-base resolution.

Booth MJ, Marsico G, Bachman M, Beraldi D, Balasubramanian S.

Nat Chem. 2014 May;6(5):435-40. doi: 10.1038/nchem.1893. Epub 2014 Mar 23. Erratum in: Nat Chem. Nat Chem. 2014;6(6):553.

PMID:
24755596
[PubMed - indexed for MEDLINE]
13.

Integrating 5-hydroxymethylcytosine into the epigenomic landscape of human embryonic stem cells.

Szulwach KE, Li X, Li Y, Song CX, Han JW, Kim S, Namburi S, Hermetz K, Kim JJ, Rudd MK, Yoon YS, Ren B, He C, Jin P.

PLoS Genet. 2011 Jun;7(6):e1002154. doi: 10.1371/journal.pgen.1002154. Epub 2011 Jun 23.

PMID:
21731508
[PubMed - indexed for MEDLINE]
Free PMC Article
14.

Replacement of Oct4 by Tet1 during iPSC induction reveals an important role of DNA methylation and hydroxymethylation in reprogramming.

Gao Y, Chen J, Li K, Wu T, Huang B, Liu W, Kou X, Zhang Y, Huang H, Jiang Y, Yao C, Liu X, Lu Z, Xu Z, Kang L, Chen J, Wang H, Cai T, Gao S.

Cell Stem Cell. 2013 Apr 4;12(4):453-69. doi: 10.1016/j.stem.2013.02.005. Epub 2013 Mar 14.

PMID:
23499384
[PubMed - indexed for MEDLINE]
Free Article
15.

Tet1 and 5-hydroxymethylation: a genome-wide view in mouse embryonic stem cells.

Wu H, Zhang Y.

Cell Cycle. 2011 Aug 1;10(15):2428-36. Epub 2011 Aug 1.

PMID:
21750410
[PubMed - indexed for MEDLINE]
Free PMC Article
16.

Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells.

Koh KP, Yabuuchi A, Rao S, Huang Y, Cunniff K, Nardone J, Laiho A, Tahiliani M, Sommer CA, Mostoslavsky G, Lahesmaa R, Orkin SH, Rodig SJ, Daley GQ, Rao A.

Cell Stem Cell. 2011 Feb 4;8(2):200-13. doi: 10.1016/j.stem.2011.01.008.

PMID:
21295276
[PubMed - indexed for MEDLINE]
Free PMC Article
17.

Dynamic hydroxymethylation of deoxyribonucleic acid marks differentiation-associated enhancers.

Sérandour AA, Avner S, Oger F, Bizot M, Percevault F, Lucchetti-Miganeh C, Palierne G, Gheeraert C, Barloy-Hubler F, Péron CL, Madigou T, Durand E, Froguel P, Staels B, Lefebvre P, Métivier R, Eeckhoute J, Salbert G.

Nucleic Acids Res. 2012 Sep 1;40(17):8255-65. Epub 2012 Jun 22.

PMID:
22730288
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine.

Ito S, Shen L, Dai Q, Wu SC, Collins LB, Swenberg JA, He C, Zhang Y.

Science. 2011 Sep 2;333(6047):1300-3. doi: 10.1126/science.1210597. Epub 2011 Jul 21.

PMID:
21778364
[PubMed - indexed for MEDLINE]
Free PMC Article
19.

A screen for hydroxymethylcytosine and formylcytosine binding proteins suggests functions in transcription and chromatin regulation.

Iurlaro M, Ficz G, Oxley D, Raiber EA, Bachman M, Booth MJ, Andrews S, Balasubramanian S, Reik W.

Genome Biol. 2013;14(10):R119.

PMID:
24156278
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

Genomic mapping of 5-hydroxymethylcytosine in the human brain.

Jin SG, Wu X, Li AX, Pfeifer GP.

Nucleic Acids Res. 2011 Jul;39(12):5015-24. doi: 10.1093/nar/gkr120. Epub 2011 Mar 4.

PMID:
21378125
[PubMed - indexed for MEDLINE]
Free PMC Article

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