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Results: 1 to 20 of 117

1.

A high resolution map of a cyanobacterial transcriptome.

Vijayan V, Jain IH, O'Shea EK.

Genome Biol. 2011;12(5):R47. doi: 10.1186/gb-2011-12-5-r47. Epub 2011 May 25.

PMID:
21612627
[PubMed - indexed for MEDLINE]
Free PMC Article
2.

Identification of novel non-coding small RNAs from Streptococcus pneumoniae TIGR4 using high-resolution genome tiling arrays.

Kumar R, Shah P, Swiatlo E, Burgess SC, Lawrence ML, Nanduri B.

BMC Genomics. 2010 Jun 3;11:350. doi: 10.1186/1471-2164-11-350.

PMID:
20525227
[PubMed - indexed for MEDLINE]
Free PMC Article
3.

High resolution transcriptome maps for wild-type and nonsense-mediated decay-defective Caenorhabditis elegans.

Ramani AK, Nelson AC, Kapranov P, Bell I, Gingeras TR, Fraser AG.

Genome Biol. 2009;10(9):R101. doi: 10.1186/gb-2009-10-9-r101. Epub 2009 Sep 24.

PMID:
19778439
[PubMed - indexed for MEDLINE]
Free PMC Article
4.

High-resolution transcriptome and genome-wide dynamics of RNA polymerase and NusA in Mycobacterium tuberculosis.

Uplekar S, Rougemont J, Cole ST, Sala C.

Nucleic Acids Res. 2013 Jan;41(2):961-77. doi: 10.1093/nar/gks1260. Epub 2012 Dec 7.

PMID:
23222129
[PubMed - indexed for MEDLINE]
Free PMC Article
5.

The transcriptional landscape of Chlamydia pneumoniae.

Albrecht M, Sharma CM, Dittrich MT, Müller T, Reinhardt R, Vogel J, Rudel T.

Genome Biol. 2011 Oct 11;12(10):R98. doi: 10.1186/gb-2011-12-10-r98.

PMID:
21989159
[PubMed - indexed for MEDLINE]
Free PMC Article
6.

Next-generation sequencing facilitates quantitative analysis of wild-type and Nrl(-/-) retinal transcriptomes.

Brooks MJ, Rajasimha HK, Roger JE, Swaroop A.

Mol Vis. 2011;17:3034-54. Epub 2011 Nov 23.

PMID:
22162623
[PubMed - indexed for MEDLINE]
Free PMC Article
7.

Mapping genomic features of tiling microarray data by TileMapper.

Cheung HH, Claus J, Singh S, Sastry C, Rennert OM, Chan WY, Lee TL.

Methods Mol Biol. 2013;1067:225-33. doi: 10.1007/978-1-62703-607-8_14.

PMID:
23975795
[PubMed - indexed for MEDLINE]
8.

Structure and complexity of a bacterial transcriptome.

Passalacqua KD, Varadarajan A, Ondov BD, Okou DT, Zwick ME, Bergman NH.

J Bacteriol. 2009 May;191(10):3203-11. doi: 10.1128/JB.00122-09. Epub 2009 Mar 20.

PMID:
19304856
[PubMed - indexed for MEDLINE]
Free PMC Article
9.

Differential analysis for high density tiling microarray data.

Ghosh S, Hirsch HA, Sekinger EA, Kapranov P, Struhl K, Gingeras TR.

BMC Bioinformatics. 2007 Sep 24;8:359.

PMID:
17892592
[PubMed - indexed for MEDLINE]
Free PMC Article
10.

Identifying operons and untranslated regions of transcripts using Escherichia coli RNA expression analysis.

Tjaden B, Haynor DR, Stolyar S, Rosenow C, Kolker E.

Bioinformatics. 2002;18 Suppl 1:S337-44.

PMID:
12169564
[PubMed - indexed for MEDLINE]
Free Article
11.

Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architecture.

Li L, Wang X, Xia M, Stolc V, Su N, Peng Z; Waraporn Tongprasit, Li S, Wang J, Wang X, Deng XW.

Genome Biol. 2005;6(6):R52. Epub 2005 May 27. Erratum in: Genome Biol. 2005;6(8):403. Waraporn Tongprasit [added].

PMID:
15960804
[PubMed - indexed for MEDLINE]
Free PMC Article
12.

Strand-specific transcriptome profiling with directly labeled RNA on genomic tiling microarrays.

Yu WH, Høvik H, Olsen I, Chen T.

BMC Mol Biol. 2011 Jan 14;12:3. doi: 10.1186/1471-2199-12-3.

PMID:
21235785
[PubMed - indexed for MEDLINE]
Free PMC Article
13.

Transcriptome complexity in a genome-reduced bacterium.

Güell M, van Noort V, Yus E, Chen WH, Leigh-Bell J, Michalodimitrakis K, Yamada T, Arumugam M, Doerks T, Kühner S, Rode M, Suyama M, Schmidt S, Gavin AC, Bork P, Serrano L.

Science. 2009 Nov 27;326(5957):1268-71. doi: 10.1126/science.1176951.

PMID:
19965477
[PubMed - indexed for MEDLINE]
Free Article
14.

Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring.

Milan M, Coppe A, Reinhardt R, Cancela LM, Leite RB, Saavedra C, Ciofi C, Chelazzi G, Patarnello T, Bortoluzzi S, Bargelloni L.

BMC Genomics. 2011 May 12;12:234. doi: 10.1186/1471-2164-12-234.

PMID:
21569398
[PubMed - indexed for MEDLINE]
Free PMC Article
15.

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution.

Wilhelm BT, Marguerat S, Watt S, Schubert F, Wood V, Goodhead I, Penkett CJ, Rogers J, Bähler J.

Nature. 2008 Jun 26;453(7199):1239-43. doi: 10.1038/nature07002. Epub 2008 May 18.

PMID:
18488015
[PubMed - indexed for MEDLINE]
16.

Uses and pitfalls of microarrays for studying transcriptional regulation.

Rhodius VA, LaRossa RA.

Curr Opin Microbiol. 2003 Apr;6(2):114-9. Review.

PMID:
12732299
[PubMed - indexed for MEDLINE]
17.

Discovery of imprinted transcripts in the mouse transcriptome using large-scale expression profiling.

Nikaido I, Saito C, Mizuno Y, Meguro M, Bono H, Kadomura M, Kono T, Morris GA, Lyons PA, Oshimura M, Hayashizaki Y, Okazaki Y; RIKEN GER Group; GSL Members.

Genome Res. 2003 Jun;13(6B):1402-9.

PMID:
12819139
[PubMed - indexed for MEDLINE]
Free PMC Article
18.

Induction of a group 2 sigma factor, RPOD3, by high light and the underlying mechanism in Synechococcus elongatus PCC 7942.

Seki A, Hanaoka M, Akimoto Y, Masuda S, Iwasaki H, Tanaka K.

J Biol Chem. 2007 Dec 21;282(51):36887-94. Epub 2007 Oct 31.

PMID:
17977831
[PubMed - indexed for MEDLINE]
Free Article
19.

Differential patterns of intronic and exonic DNA regions with respect to RNA polymerase II occupancy, nucleosome density and H3K36me3 marking in fission yeast.

Wilhelm BT, Marguerat S, Aligianni S, Codlin S, Watt S, Bähler J.

Genome Biol. 2011 Aug 22;12(8):R82. doi: 10.1186/gb-2011-12-8-r82.

PMID:
21859475
[PubMed - indexed for MEDLINE]
Free PMC Article
20.

The transition between transcriptional initiation and elongation in E. coli is highly variable and often rate limiting.

Reppas NB, Wade JT, Church GM, Struhl K.

Mol Cell. 2006 Dec 8;24(5):747-57.

PMID:
17157257
[PubMed - indexed for MEDLINE]
Free Article

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